Gm1859 Pseudogene Detail

Summary

• Symbol
  Gm1859
• Name
  predicted gene 1859
• Synonyms
  LOC271521

• Feature Type
  pseudogene
• IDs
  MGI:3037717
  NCBI Gene: 271521
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:53354464-53354958 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037717	pseudogene	Chr18:53354041-53372534 (-)
129S1/SvImJ	ENSMUSG00200034414	pseudogene	Chr18:50393515-50394009 (-)
A/J	ENSMUSG00195005734	pseudogene	Chr18:50553975-50554469 (-)
AKR/J	ENSMUSG00220016582	pseudogene	Chr18:50534400-50534894 (-)
BALB/cJ	ENSMUSG00180012974	pseudogene	Chr18:51120423-51120917 (-)
C3H/HeJ	ENSMUSG00175036738	pseudogene	Chr18:50729470-50729964 (-)
C57BL/6NJ	ENSMUSG00215009090	pseudogene	Chr18:50076045-50076539 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014288	pseudogene	Chr18:49937095-49937594 (-)
CBA/J	ENSMUSG00210033858	pseudogene	Chr18:50656834-50657328 (-)
DBA/2J	ENSMUSG00185016168	pseudogene	Chr18:50576881-50577375 (-)
FVB/NJ	ENSMUSG00205015013	pseudogene	Chr18:50018467-50018961 (-)
JF1/MsJ	ENSUMUG00000029065	pseudogene	Chr18:50498242-50498735 (-)
LP/J	ENSMUSG00230011602	pseudogene	Chr18:52572846-52573340 (-)
NOD/ShiLtJ	ENSMUSG00190029297	pseudogene	Chr18:50297728-50298222 (-)
NZO/HlLtJ	ENSMUSG00225035404	pseudogene	Chr18:52487504-52487998 (-)
PWK/PhJ	ENSLUMG00010021788	pseudogene	Chr18:50650923-50651416 (-)
SPRET/EiJ	ENSMSPG00010018698	pseudogene	Chr18:50986005-50986498 (-)
WSB/EiJ	ENSIUOG00005009514	pseudogene	Chr18:50191200-50191694 (-)

Homology

• Gene Tree
  Gm1859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm1859
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000118240 (Evidence)
• NCBI Gene
  271521

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118240	Ensembl Gene Model | MGI Sequence Detail	495	C57BL/6J
transcript	ENSMUST00000235759	Ensembl | MGI Sequence Detail	495	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67