Gm1848 Pseudogene Detail

Summary

• Symbol
  Gm1848
• Name
  predicted gene 1848
• Synonyms
  LOC236737

• Feature Type
  pseudogene
• IDs
  MGI:3037706
  NCBI Gene: 236737
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:21013083-21013879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 16.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037706	pseudogene	ChrX:21012921-21013883 (+)
129S1/SvImJ	ENSMUSG00200015576	pseudogene	ChrX:15777941-15778737 (+)
A/J	ENSMUSG00195007650	pseudogene	ChrX:15779016-15779812 (+)
AKR/J	ENSMUSG00220018474	pseudogene	ChrX:15273836-15274632 (+)
BALB/cJ	ENSMUSG00180023418	pseudogene	ChrX:15712671-15713467 (+)
C3H/HeJ	ENSMUSG00175030850	pseudogene	ChrX:15753276-15754072 (+)
C57BL/6NJ	ENSMUSG00215017651	pseudogene	ChrX:16357315-16358111 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027273	pseudogene	ChrX:15690125-15690928 (+)
CBA/J	ENSMUSG00210020711	pseudogene	ChrX:15809847-15810643 (+)
DBA/2J	ENSMUSG00185031980	pseudogene	ChrX:22410446-22411242 (+)
FVB/NJ	ENSMUSG00205025640	pseudogene	ChrX:15354076-15354872 (+)
JF1/MsJ	ENSUMUG00000030314	pseudogene	ChrX:36242211-36243010 (+)
LP/J	ENSMUSG00230006663	pseudogene	ChrX:26986401-26987197 (+)
NOD/ShiLtJ	ENSMUSG00190030132	pseudogene	ChrX:15756335-15757131 (+)
NZO/HlLtJ	ENSMUSG00225041346	pseudogene	ChrX:32219616-32220412 (+)
PWK/PhJ	ENSLUMG00010016524	pseudogene	ChrX:15652009-15652808 (+)
SPRET/EiJ	ENSMSPG00010010760	pseudogene	ChrX:17003023-17003808 (+)
WSB/EiJ	ENSIUOG00005033207	pseudogene	ChrX:12385259-12386055 (+)

Homology

• Gene Tree
  Gm1848
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000083892 (Evidence)
• NCBI Gene
  236737

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083892	Ensembl Gene Model | MGI Sequence Detail	797	C57BL/6J
transcript	ENSMUST00000120711	Ensembl | MGI Sequence Detail	789	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:45876 Malik N, et al., Structural organization and chromosomal localization of the human Na,K-ATPase beta 3 subunit gene and pseudogene. Mamm Genome. 1998 Feb;9(2):136-43

TSS for Gm1848:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160701	ChrX:21012923-21012928 (+)	-157 bp