Gm1833 Pseudogene Detail

Summary

• Symbol
  Gm1833
• Name
  predicted gene 1833
• Synonyms
  LOC227393

• Feature Type
  pseudogene
• IDs
  MGI:3037691
  NCBI Gene: 227393
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:96573145-96573895 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037691	pseudogene	Chr1:96573145-96574094 (+)
129S1/SvImJ	ENSMUSG00200000257	pseudogene	Chr1:93750349-93751099 (+)
A/J	ENSMUSG00195000495	pseudogene	Chr1:93282958-93283708 (+)
AKR/J	ENSMUSG00220000246	pseudogene	Chr1:93533174-93533924 (+)
BALB/cJ	ENSMUSG00180005850	pseudogene	Chr1:93590700-93591450 (+)
C3H/HeJ	ENSMUSG00175005603	pseudogene	Chr1:93490794-93491544 (+)
C57BL/6NJ	ENSMUSG00215000372	pseudogene	Chr1:93479076-93479826 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000117	pseudogene	Chr1:93243175-93243225 (+)
CBA/J	ENSMUSG00210000159	pseudogene	Chr1:93340800-93341550 (+)
DBA/2J	ENSMUSG00185014305	pseudogene	Chr1:97807629-97808379 (+)
FVB/NJ	ENSMUSG00205000914	pseudogene	Chr1:92701696-92702446 (+)
JF1/MsJ	ENSUMUG00000024955	pseudogene	Chr1:96573705-96573755 (+)
LP/J	ENSMUSG00230023985	pseudogene	Chr1:97071287-97072037 (+)
NOD/ShiLtJ	ENSMUSG00190000424	pseudogene	Chr1:93396734-93397484 (+)
NZO/HlLtJ	ENSMUSG00225003775	pseudogene	Chr1:100974865-100975615 (+)
PWK/PhJ	ENSLUMG00010006681	pseudogene	Chr1:92967098-92967848 (+)
SPRET/EiJ	ENSMSPG00010000788	pseudogene	Chr1:95033531-95034281 (+)
WSB/EiJ	ENSIUOG00005000257	pseudogene	Chr1:93054223-93054973 (+)

Homology

• Gene Tree
  Gm1833
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm1833
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000100362 (Evidence)
• NCBI Gene
  227393

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100362	Ensembl Gene Model | MGI Sequence Detail	751	C57BL/6J
transcript	ENSMUST00000191608	Ensembl | MGI Sequence Detail	682	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582