E530001F21Rik Pseudogene Detail

Summary

• Symbol
  E530001F21Rik
• Name
  RIKEN cDNA E530001F21 gene

• Feature Type
  pseudogene
• IDs
  MGI:3036288
  NCBI Gene: 279610
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:104208238-104208967 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036288	pseudogene	ChrX:104207984-104209111 (-)
129S1/SvImJ	ENSMUSG00200043226	pseudogene	Chr7:9004350-9007117 (+)
129S1/SvImJ	ENSMUSG00200038977	pseudogene	ChrX:86002226-86002955 (-)
A/J	ENSMUSG00195041632	pseudogene	ChrX:89735824-89736553 (-)
AKR/J	ENSMUSG00220039064	pseudogene	ChrX:84428212-84428941 (-)
BALB/cJ	ENSMUSG00180052015	pseudogene	Chr7:9381523-9384290 (+)
BALB/cJ	ENSMUSG00180044181	pseudogene	ChrX:86402045-86402774 (-)
C3H/HeJ	ENSMUSG00175051444	pseudogene	Chr7:9861302-9864069 (+)
C3H/HeJ	ENSMUSG00175047769	pseudogene	ChrX:89977888-89978617 (-)
C57BL/6NJ	ENSMUSG00215047156	pseudogene	ChrX:86587838-86588567 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032758	pseudogene	Chr7:9874238-9877001 (+)
CAST/EiJ	ENSTCUG00005043021	pseudogene	ChrX:87423074-87423804 (-)
CBA/J	ENSMUSG00210045510	pseudogene	ChrX:86871535-86872264 (-)
CBA/J	ENSMUSG00210049765	pseudogene	Chr7:9096420-9099187 (+)
DBA/2J	ENSMUSG00185056081	pseudogene	Chr7:12610892-12613659 (+)
DBA/2J	ENSMUSG00185045161	pseudogene	ChrX:99315775-99316504 (-)
FVB/NJ	ENSMUSG00205038642	pseudogene	ChrX:85950642-85951371 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230048921	pseudogene	Chr7:16828800-16831567 (+)
LP/J	ENSMUSG00230043141	pseudogene	ChrX:106003011-106003740 (-)
NOD/ShiLtJ	ENSMUSG00190039577	pseudogene	ChrX:86052391-86053120 (-)
NZO/HlLtJ	ENSMUSG00225054741	pseudogene	Chr7:14063383-14066150 (+)
NZO/HlLtJ	ENSMUSG00225054740	pseudogene	Chr7:14051997-14054763 (+)
NZO/HlLtJ	ENSMUSG00225046168	pseudogene	ChrX:111130142-111130871 (-)
NZO/HlLtJ	ENSMUSG00225054739	pseudogene	Chr7:14037668-14040435 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043084	pseudogene	ChrX:86545839-86546568 (-)

Homology

• Gene Tree
  E530001F21Rik
  

Expression

• Assay Results
  621
• Tissues
  15
• cDNA Data
  2
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000083889 (Evidence)
• NCBI Gene
  279610

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083889	Ensembl Gene Model | MGI Sequence Detail	730	C57BL/6J
transcript	ENSMUST00000120991	Ensembl | MGI Sequence Detail	730	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Developmental Gene Expression 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;