4933427G23Rik Gene Detail

Summary

• Symbol
  4933427G23Rik
• Name
  RIKEN cDNA 4933427G23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3036235
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:24020616-24036895 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  742 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036235	lncRNA gene	Chr5:24020616-24036895 (-)
129S1/SvImJ	ENSMUSG00200011828	lncRNA gene	Chr5:19637046-19645628 (-)
A/J	ENSMUSG00195042483	lncRNA gene	Chr5:19098127-19114406 (-)
AKR/J	ENSMUSG00220038642	lncRNA gene	Chr5:19189720-19206102 (-)
BALB/cJ	ENSMUSG00180026198	lncRNA gene	Chr5:18967041-18983081 (-)
C3H/HeJ	ENSMUSG00175048156	lncRNA gene	Chr5:20896326-20912616 (-)
C57BL/6NJ	ENSMUSG00215029456	lncRNA gene	Chr5:19531961-19548264 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036912	pseudogene	Chr9:53628510-53629068 (+)
CAST/EiJ	ENSTCUG00005003557	lncRNA gene	Chr5:19111325-19127102 (-)
CBA/J	ENSMUSG00210005613	lncRNA gene	Chr5:19935746-19952026 (-)
DBA/2J	ENSMUSG00185038819	lncRNA gene	Chr5:21478627-21494667 (-)
FVB/NJ	ENSMUSG00205032636	lncRNA gene	Chr5:18700445-18716481 (-)
JF1/MsJ	ENSUMUG00000007076	lncRNA gene	Chr5:26031330-26047649 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190005206	lncRNA gene	Chr5:19011233-19027616 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036295	lncRNA gene	Chr5:19074464-19090214 (-)
SPRET/EiJ	ENSMSPG00010030939	lncRNA gene	Chr5:19941732-19958133 (-)
WSB/EiJ	ENSIUOG00005044341	lncRNA gene	Chr5:21826995-21843113 (-)

Homology

• Gene Tree
  4933427G23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 4933427G23Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086697 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086697	Ensembl Gene Model | MGI Sequence Detail	16280	C57BL/6J
transcript	ENSMUST00000122963	Ensembl | MGI Sequence Detail	2515	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804