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3000002C10Rik Pseudogene Detail
Summary
  • Symbol
    3000002C10Rik
  • Name
    RIKEN cDNA 3000002C10 gene
  • Feature Type
    pseudogene
  • IDs
    MGI:3036226
    NCBI Gene: 378954
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:109659442-109660449 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3036226
 pseudogene Chr9:109659221-109660499 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039759
 pseudogene Chr9:111921035-111927715 (-)
A/J MGP_AJ_G0039758
 pseudogene Chr9:107875671-107880770 (-)
AKR/J MGP_AKRJ_G0039683
 pseudogene Chr9:110548519-110553617 (-)
BALB/cJ MGP_BALBcJ_G0039727
 pseudogene Chr9:107610697-107618293 (-)
C3H/HeJ MGP_C3HHeJ_G0039386
 pseudogene Chr9:111011935-111017743 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040288
 pseudogene Chr9:114966476-114971266 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0039359
 pseudogene Chr9:119231362-119239797 (-)
DBA/2J MGP_DBA2J_G0039555
 pseudogene Chr9:107335687-107342357 (-)
FVB/NJ MGP_FVBNJ_G0039513
 pseudogene Chr9:106165797-106170686 (-)
LP/J MGP_LPJ_G0039594
 pseudogene Chr9:112233490-112240778 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0039513
 pseudogene Chr9:120607064-120612259 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0040395
 pseudogene Chr9:110845119-110851021 (-)
PWK/PhJ MGP_PWKPhJ_G0038183
 pseudogene Chr9:107558183-107562832 (-)
SPRET/EiJ MGP_SPRETEiJ_G0037929
 pseudogene Chr9:110929774-110935620 (-)
WSB/EiJ MGP_WSBEiJ_G0038741
 pseudogene Chr9:110736183-110742017 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000070282 Ensembl Gene Model | MGI Sequence Detail 1008 C57BL/6J ±  kb
transcript ENSMUST00000133495 Ensembl | MGI Sequence Detail 1008 Not Applicable  
polypeptide Q8CEV2 UniProt | EBI | MGI Sequence Detail 156 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
    IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory