AA387883 Gene Detail

Summary

• Symbol
  AA387883
• Name
  expressed sequence AA387883
• Synonyms
  100043450

• Feature Type
  lncRNA gene
• IDs
  MGI:3035466
  NCBI Gene: 100043450
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:52911612-52915362 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 46.91 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035466	lncRNA gene	Chr19:52911556-52930115 (+)
129S1/SvImJ	ENSMUSG00200021733	lncRNA gene	Chr19:49599816-49617854 (+)
A/J	ENSMUSG00195018984	lncRNA gene	Chr19:49774550-49792586 (+)
AKR/J	ENSMUSG00220019470	lncRNA gene	Chr19:49547510-49565509 (+)
BALB/cJ	ENSMUSG00180021306	lncRNA gene	Chr19:50014212-50032268 (+)
C3H/HeJ	ENSMUSG00175006508	lncRNA gene	Chr19:49549855-49567899 (+)
C57BL/6NJ	ENSMUSG00215005154	lncRNA gene	Chr19:49636618-49654643 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017015	lncRNA gene	Chr19:49209858-49223751 (+)
CBA/J	ENSMUSG00210019307	lncRNA gene	Chr19:49629412-49647466 (+)
DBA/2J	ENSMUSG00185009255	lncRNA gene	Chr19:50127842-50145883 (+)
FVB/NJ	ENSMUSG00205037167	lncRNA gene	Chr19:49008837-49026852 (+)
JF1/MsJ	ENSUMUG00000046827	lncRNA gene	Chr19:50331687-50345848 (+)
LP/J	ENSMUSG00230028386	lncRNA gene	Chr19:50881520-50899557 (+)
NOD/ShiLtJ	ENSMUSG00190005783	lncRNA gene	Chr19:49488611-49506645 (+)
NZO/HlLtJ	ENSMUSG00225025640	lncRNA gene	Chr19:54483828-54501871 (+)
PWK/PhJ	ENSLUMG00010001258	lncRNA gene	Chr19:49384959-49398745 (+)
SPRET/EiJ	ENSMSPG00010008204	lncRNA gene	Chr19:49225945-49240193 (+)
WSB/EiJ	ENSIUOG00005007028	lncRNA gene	Chr19:48982039-49001373 (+)

Homology

• Gene Tree
  AA387883
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000117896 (Evidence)
• NCBI Gene
  100043450

Representative Sequences			Length	Strain/Species
genomic	100043450	NCBI Gene Model | MGI Sequence Detail	3751	C57BL/6J
transcript	NR_030678	RefSeq | MGI Sequence Detail	1679	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:3782628

References

• Summaries
  All 9
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563