AA619741 Pseudogene Detail

Summary

• Symbol
  AA619741
• Name
  expressed sequence AA619741

• Feature Type
  pseudogene
• IDs
  MGI:3035322
  NCBI Gene: 241051
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:34674625-34675270 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 13.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035322	pseudogene	Chr1:34672616-34675291 (-)
129S1/SvImJ	ENSMUSG00200005070	pseudogene	Chr1:32211875-32212520 (-)
A/J	ENSMUSG00195043987	pseudogene	Chr1:31892362-31893007 (-)
AKR/J	ENSMUSG00220009365	pseudogene	Chr1:31910240-31910882 (-)
BALB/cJ	ENSMUSG00180012106	pseudogene	Chr1:32005451-32006096 (-)
C3H/HeJ	ENSMUSG00175001365	pseudogene	Chr1:31896650-31897295 (-)
C57BL/6NJ	ENSMUSG00215034073	pseudogene	Chr1:31982463-31983108 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009060	pseudogene	Chr1:29378228-29378876 (-)
CAST/EiJ	ENSTCUG00005003233	pseudogene	Chr1:32041217-32041862 (-)
CBA/J	ENSMUSG00210006611	pseudogene	Chr1:31734130-31734772 (-)
DBA/2J	ENSMUSG00185011118	pseudogene	Chr1:32817615-32818260 (-)
FVB/NJ	ENSMUSG00205035911	pseudogene	Chr1:31922120-31922765 (-)
JF1/MsJ	ENSUMUG00000031552	pseudogene	Chr1:32017844-32018489 (-)
LP/J	ENSMUSG00230026148	pseudogene	Chr1:32854011-32854656 (-)
NOD/ShiLtJ	ENSMUSG00190041774	pseudogene	Chr1:31919265-31919910 (-)
NZO/HlLtJ	ENSMUSG00225014304	pseudogene	Chr1:36126910-36127555 (-)
PWK/PhJ	ENSLUMG00010037757	pseudogene	Chr1:31582619-31583264 (-)
SPRET/EiJ	ENSMSPG00010030173	pseudogene	Chr1:33005514-33006159 (-)
WSB/EiJ	ENSIUOG00005038355	pseudogene	Chr1:31896525-31897170 (-)

Homology

• Gene Tree
  AA619741
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving AA619741
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000104098 (Evidence)
• NCBI Gene
  241051

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104098	Ensembl Gene Model | MGI Sequence Detail	646	C57BL/6J
transcript	ENSMUST00000195095	Ensembl | MGI Sequence Detail	646	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563