AA388235 Gene Detail

Summary

• Symbol
  AA388235
• Name
  expressed sequence AA388235

• Feature Type
  lncRNA gene
• IDs
  MGI:3035178
  NCBI Gene: 433100
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:34200466-34204332 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035178	lncRNA gene	Chr17:34197396-34204332 (+)
129S1/SvImJ	ENSMUSG00200054289	lncRNA gene	Chr17:29903567-29904850 (+)
A/J	ENSMUSG00195046406	lncRNA gene	Chr17:30767226-30768297 (+)
AKR/J	ENSMUSG00220053823	lncRNA gene	Chr17:29794864-29795935 (+)
BALB/cJ	ENSMUSG00180045229	lncRNA gene	Chr17:30153004-30154294 (+)
C3H/HeJ	ENSMUSG00175054189	lncRNA gene	Chr17:29681065-29682136 (+)
C57BL/6NJ	ENSMUSG00215054478	lncRNA gene	Chr17:29743730-29745013 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052190	lncRNA gene	Chr17:30727202-30728497 (+)
CBA/J	ENSMUSG00210051111	lncRNA gene	Chr17:29503163-29504234 (+)
DBA/2J	ENSMUSG00185054598	lncRNA gene	Chr17:32172313-32173603 (+)
FVB/NJ	ENSMUSG00205053659	lncRNA gene	Chr17:30030820-30032110 (+)
JF1/MsJ	ENSUMUG00000057464	lncRNA gene	Chr17:31435081-31436370 (+)
LP/J	ENSMUSG00230054791	lncRNA gene	Chr17:33301916-33303199 (+)
NOD/ShiLtJ	ENSMUSG00190054386	lncRNA gene	Chr17:29653030-29654320 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010053553	lncRNA gene	Chr17:29281301-29282603 (+)
SPRET/EiJ	ENSMSPG00010050188	lncRNA gene	Chr17:30425461-30426757 (+)
WSB/EiJ	ENSIUOG00005051798	lncRNA gene	Chr17:30355927-30357222 (+)

Homology

• Gene Tree
  AA388235
  

Expression

• Assay Results
  597
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000118084 (Evidence)
• NCBI Gene
  433100

Representative Sequences			Length	Strain/Species
genomic	433100	NCBI Gene Model | MGI Sequence Detail	3867	C57BL/6J
transcript	NR_033305	RefSeq | MGI Sequence Detail	3867	C57BL/6
polypeptide	Q8CCL0	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582