AA623943 Gene Detail

Summary

• Symbol
  AA623943
• Name
  expressed sequence AA623943

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3035046
  NCBI Gene: 544808
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:94703625-94708477 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  294 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035046	protein coding gene	Chr11:94702954-94708478 (-)
129S1/SvImJ	ENSMUSG00200053698	pseudogene	Chr11:91946717-91947446 (-)
A/J	ENSMUSG00195053248	pseudogene	Chr11:91669786-91670516 (-)
AKR/J	ENSMUSG00220052260	pseudogene	Chr11:91928733-91929463 (-)
BALB/cJ	ENSMUSG00180052510	pseudogene	Chr11:91915515-91916244 (-)
C3H/HeJ	ENSMUSG00175052238	pseudogene	Chr11:91929350-91930080 (-)
C57BL/6NJ	ENSMUSG00215054137	pseudogene	Chr11:91519744-91520473 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037104	pseudogene	Chr11:90519314-90520020 (-)
CAST/EiJ	ENSTCUG00005017333	pseudogene	Chr11:91376079-91376808 (-)
CBA/J	ENSMUSG00210053744	pseudogene	Chr11:91632768-91633498 (-)
DBA/2J	ENSMUSG00185052234	pseudogene	Chr11:91968441-91969170 (-)
FVB/NJ	ENSMUSG00205050135	pseudogene	Chr11:91834030-91834760 (-)
JF1/MsJ	ENSUMUG00000055994	pseudogene	Chr11:92283427-92284157 (-)
LP/J	ENSMUSG00230051339	pseudogene	Chr11:93029957-93030686 (-)
NOD/ShiLtJ	ENSMUSG00190052804	pseudogene	Chr11:92009256-92009985 (-)
NZO/HlLtJ	ENSMUSG00225053106	pseudogene	Chr11:95076207-95076936 (-)
PWK/PhJ	ENSLUMG00010035431	pseudogene	Chr11:91832415-91833145 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050948	pseudogene	Chr11:91776549-91777279 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving AA623943
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000081478 (Evidence), ENSMUSG00000129918 (Evidence)
• NCBI Gene
  544808

Representative Sequences			Length	Strain/Species
genomic	544808	NCBI Gene Model | MGI Sequence Detail	4853	C57BL/6J
transcript	NM_001372571	RefSeq | MGI Sequence Detail	815	C57BL/6
polypeptide	NP_001359500	RefSeq | MGI Sequence Detail	149	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307