AU019990 Gene Detail

Summary

• Symbol
  AU019990
• Name
  expressed sequence AU019990

• Feature Type
  lncRNA gene
• IDs
  MGI:3034641
  NCBI Gene: 767814
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:132440116-132494987 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 64.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1957 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3034641	lncRNA gene	Chr2:132439361-132505472 (+)
129S1/SvImJ	ENSMUSG00200049598	lncRNA gene	Chr2:129491016-129545964 (+)
A/J	ENSMUSG00195032690	lncRNA gene	Chr2:129517593-129572473 (+)
AKR/J	ENSMUSG00220045381	lncRNA gene	Chr2:129289902-129344912 (+)
BALB/cJ	ENSMUSG00180049986	lncRNA gene	Chr2:129336109-129391007 (+)
C3H/HeJ	ENSMUSG00175048909	lncRNA gene	Chr2:129876479-129931489 (+)
C57BL/6NJ	ENSMUSG00215038212	lncRNA gene	Chr2:129365524-129420404 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005479	lincRNA gene	Chr2:125377028-125433047 (+)
CAST/EiJ	ENSTCUG00005040274	lncRNA gene	Chr2:128645127-128699739 (+)
CBA/J	ENSMUSG00210038404	lncRNA gene	Chr2:129732945-129787954 (+)
DBA/2J	ENSMUSG00185037353	lncRNA gene	Chr2:129377391-129432266 (+)
FVB/NJ	ENSMUSG00205043381	lncRNA gene	Chr2:128551468-128606451 (+)
JF1/MsJ	ENSUMUG00000027894	lncRNA gene	Chr2:129181107-129235756 (+)
LP/J	ENSMUSG00230040097	lncRNA gene	Chr2:131126074-131181016 (+)
NOD/ShiLtJ	ENSMUSG00190015336	lncRNA gene	Chr2:129458607-129513497 (+)
NZO/HlLtJ	ENSMUSG00225027883	lncRNA gene	Chr2:139036381-139091380 (+)
PWK/PhJ	ENSLUMG00010043922	lncRNA gene	Chr2:129187204-129244083 (+)
SPRET/EiJ	ENSMSPG00010033446	lncRNA gene	Chr2:131557026-131613163 (+)
WSB/EiJ	ENSIUOG00005044558	lncRNA gene	Chr2:129299700-129354334 (+)

Homology

• Gene Tree
  AU019990
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving AU019990
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000074783 (Evidence)
• NCBI Gene
  767814

Representative Sequences			Length	Strain/Species
genomic	767814	NCBI Gene Model | MGI Sequence Detail	54872	C57BL/6J
transcript	NR_033469	RefSeq | MGI Sequence Detail	2061	Not Specified
polypeptide	Q3TLE0	UniProt | EBI | MGI Sequence Detail	51	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for AU019990:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20312	Chr2:132439368-132439381 (+)	-741 bp
Tssr20313	Chr2:132441362-132441382 (+)	1,256 bp
Tssr663	Chr2:132441424-132441445 (+)	1,319 bp