AA386476 Gene Detail

Summary

• Symbol
  AA386476
• Name
  expressed sequence AA386476

• Feature Type
  lncRNA gene
• IDs
  MGI:3034595
  NCBI Gene: 546058
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:48128426-48136474 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 26.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3034595	lncRNA gene	Chr8:48128426-48138274 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033599	protein coding gene	Chr8:46858218-46859880 (+)
A/J	MGP_AJ_G0033581	protein coding gene	Chr8:45025037-45026700 (+)
AKR/J	MGP_AKRJ_G0033506	protein coding gene	Chr8:46331820-46333481 (+)
BALB/cJ	MGP_BALBcJ_G0033578	protein coding gene	Chr8:45205753-45207418 (+)
C3H/HeJ	MGP_C3HHeJ_G0033287	protein coding gene	Chr8:46899889-46901550 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034094	protein coding gene	Chr8:48615554-48617215 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031043	protein coding gene	Chr8:41255456-41257168 (+)
CAST/EiJ	MGP_CASTEiJ_G0032613	protein coding gene	Chr8:46347095-46349781 (+)
CBA/J	MGP_CBAJ_G0033266	protein coding gene	Chr8:50552660-50554322 (+)
DBA/2J	MGP_DBA2J_G0033419	protein coding gene	Chr8:44827502-44829163 (+)
FVB/NJ	MGP_FVBNJ_G0033360	protein coding gene	Chr8:44301553-44303214 (+)
LP/J	MGP_LPJ_G0033507	protein coding gene	Chr8:46852179-46853841 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033405	protein coding gene	Chr8:50590702-50592367 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034112	protein coding gene	Chr8:46518706-46520368 (+)
PWK/PhJ	MGP_PWKPhJ_G0032321	protein coding gene	Chr8:44349402-44351081 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032157	protein coding gene	Chr8:45682879-45684610 (+)
WSB/EiJ	MGP_WSBEiJ_G0032729	protein coding gene	Chr8:46777047-46778709 (+)

Homology

• Gene Tree
  AA386476
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving AA386476
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074357 (Evidence)
• NCBI Gene
  546058

Representative Sequences			Length	Strain/Species
genomic	546058	NCBI Gene Model | MGI Sequence Detail	8049	C57BL/6J
transcript	NR_166692	RefSeq | MGI Sequence Detail	8049	C57BL/6
polypeptide	Q8BND0	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for AA386476:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77337	Chr8:48128397-48128448 (+)	-3 bp