Or4a80 Gene Detail

Summary

• Symbol
  Or4a80
• Name
  olfactory receptor family 4 subfamily A member 80
• Synonyms
  GA_x6K02T2Q125-51193814-51192857, MOR231-18, MOR231-19P, MOR231-19P, Olfr1253, Olfr1253-ps1, Olfr1559-ps1

• Feature Type
  protein coding gene
• IDs
  MGI:3031393
  NCBI Gene: 258370
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:89582214-89583170 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031393	protein coding gene	Chr2:89579811-89587434 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0026109	protein coding gene	Chr2:90949606-90950562 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0026528	protein coding gene	Chr2:94091786-94093134 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023920	protein coding gene	Chr2:83756252-83757208 (-)
CAST/EiJ	MGP_CASTEiJ_G0025295	protein coding gene	Chr2:90577543-90579302 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0026049	protein coding gene	Chr2:91113404-91114528 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0026585	protein coding gene	Chr2:89819231-89820187 (-)
PWK/PhJ	MGP_PWKPhJ_G0025029	protein coding gene	Chr2:86839785-86841057 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0024834	protein coding gene	Chr2:89573654-89574540 (-)
WSB/EiJ	MGP_WSBEiJ_G0025363	protein coding gene	Chr2:90579180-90580136 (-)

Homology

• Human Ortholog
  OR4A16, olfactory receptor family 4 subfamily A member 16

• Vertebrate Orthologs
  29

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  OR4A16, olfactory receptor family 4 subfamily A member 16
  
• Synonyms
  OR11-117, OR4A16Q
• Links
  HGNC:15153

  NCBI Gene ID: 81327

  neXtProt AC: NX_Q8NH70

  UniProt: Q8NH70

  
  
• Chr Location
  11q11; chr11:55343201-55344187 (+)  GRCh38.p7

---

• Human Ortholog
  OR4A5, olfactory receptor family 4 subfamily A member 5
  
• Synonyms
  OR11-111
• Links
  HGNC:15162

  NCBI Gene ID: 81318

  neXtProt AC: NX_Q8NH83

  UniProt: Q8NH83

  
  
• Chr Location
  11q11; chr11:54706832-54707902 (+)  GRCh38.p7

---

• Human Ortholog
  OR4A8, olfactory receptor family 4 subfamily A member 8 (gene/pseudogene)
  
• Synonyms
  OR4A8P
• Links
  HGNC:15165

  NCBI Gene ID: 81315

  UniProt: P0C604

  
  
• Chr Location
  11q11; chr11:54682876-54683820 (+)  GRCh38.p7

---

• Alliance of Genome Resources
  Or4a80 stringent orthology
  3 human;1 mouse;2 rat;24 zebrafish
  
• HCOP
  vertebrate homology predictions: OR4A16, OR4A5, OR4A8
• Gene Tree
  Or4a80
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Or4a80
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS50628.1

• Ensembl
  ENSMUSG00000075075 (Evidence)
• NCBI Gene
  258370

Representative Sequences			Length	Strain/Species
genomic	258370	NCBI Gene Model | MGI Sequence Detail	957	C57BL/6J
transcript	NM_146373	RefSeq | MGI Sequence Detail	957	C57BL/6
polypeptide	NP_666485	RefSeq | MGI Sequence Detail	318	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR000276 G protein-coupled receptor, rhodopsin-like
  IPR000725 Olfactory receptor

Other
Accession IDs

MGI:3031087

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42