Or10j28-ps1 Pseudogene Detail

Summary

• Symbol
  Or10j28-ps1
• Name
  olfactory receptor family 10 subfamily J member 28, pseudogene 1
• Synonyms
  EG257800, GA_x6K02T2R7CC-697259-696685, MOR267-21_p, Olfr1407-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3031241
  NCBI Gene: 257800
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:172976738-172977921 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 80.33 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031241	pseudogene	Chr1:172976738-172977938 (+)
129S1/SvImJ	ENSMUSG00200047597	pseudogene	Chr1:170924040-170925241 (+)
A/J	ENSMUSG00195048785	pseudogene	Chr1:170213327-170214527 (+)
AKR/J	ENSMUSG00220034903	pseudogene	Chr1:169955260-169956461 (+)
BALB/cJ	ENSMUSG00180046940	pseudogene	Chr1:170552766-170553967 (+)
C3H/HeJ	ENSMUSG00175048386	pseudogene	Chr1:170563676-170564877 (+)
C57BL/6NJ	ENSMUSG00215045049	pseudogene	Chr1:169937010-169938210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037054	pseudogene	Chr1:163376874-163378069 (+)
CAST/EiJ	ENSTCUG00005047162	pseudogene	Chr1:168500962-168502741 (+)
CBA/J	ENSMUSG00210044576	pseudogene	Chr1:170431593-170432794 (+)
DBA/2J	ENSMUSG00185032586	pseudogene	Chr1:174733774-174734975 (+)
FVB/NJ	ENSMUSG00205040020	pseudogene	Chr1:169423054-169424254 (+)
JF1/MsJ	ENSUMUG00000022026	pseudogene	Chr1:173651355-173652555 (+)
LP/J	ENSMUSG00230032965	pseudogene	Chr1:174328882-174330083 (+)
NOD/ShiLtJ	ENSMUSG00190041320	pseudogene	Chr1:170239130-170240331 (+)
NZO/HlLtJ	ENSMUSG00225005058	pseudogene	Chr1:177908195-177909396 (+)
PWK/PhJ	ENSLUMG00010036962	pseudogene	Chr1:169178375-169179578 (+)
SPRET/EiJ	ENSMSPG00010049256	pseudogene	Chr1:172560624-172561824 (+)
WSB/EiJ	ENSIUOG00005040620	pseudogene	Chr1:169556309-169557511 (+)

Homology

• Gene Tree
  Or10j28-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Or10j28-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000066680 (Evidence)
• NCBI Gene
  257800

Representative Sequences			Length	Strain/Species
genomic	257800	NCBI Gene Model | MGI Sequence Detail	1184	C57BL/6J

Other
Accession IDs

MGI:3645213, MGI:7276686

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42