Or4b1c Pseudogene Detail

Summary

• Symbol
  Or4b1c
• Name
  olfactory receptor family 4 subfamily B member 1C
• Synonyms
  GA_x6K02T2Q125-51650793-51649870, MOR227-4, Olfr1273-ps

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3031107
  NCBI Gene: 258977
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:90126280-90127203 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031107	polymorphic pseudogene	Chr2:90122578-90129058 (-)
129S1/SvImJ	ENSMUSG00200053112	protein coding gene	Chr2:87104719-87111209 (-)
A/J	ENSMUSG00195047889	protein coding gene	Chr2:87158038-87164560 (-)
AKR/J	ENSMUSG00220051441	protein coding gene	Chr2:87042528-87049047 (-)
BALB/cJ	ENSMUSG00180054674	protein coding gene	Chr2:87058468-87064993 (-)
C3H/HeJ	ENSMUSG00175053819	protein coding gene	Chr2:87333225-87339715 (-)
C57BL/6NJ	ENSMUSG00215053329	protein coding gene	Chr2:87165483-87171963 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051726	protein coding gene	Chr2:86572493-86578969 (-)
CBA/J	ENSMUSG00210038535	protein coding gene	Chr2:87344406-87350892 (-)
DBA/2J	ENSMUSG00185055238	protein coding gene	Chr2:87054980-87061500 (-)
FVB/NJ	ENSMUSG00205042963	protein coding gene	Chr2:86425897-86432385 (-)
JF1/MsJ	ENSUMUG00000011331	protein coding gene	Chr2:86899453-86905611 (-)
LP/J	ENSMUSG00230035712	protein coding gene	Chr2:88805697-88812232 (-)
NOD/ShiLtJ	ENSMUSG00190049878	protein coding gene	Chr2:87133660-87140185 (-)
NZO/HlLtJ	ENSMUSG00225049073	protein coding gene	Chr2:96722078-96728573 (-)
PWK/PhJ	ENSLUMG00010050755	protein coding gene	Chr2:86946745-86952899 (-)
SPRET/EiJ	ENSMSPG00010051951	protein coding gene	Chr2:88911997-88915609 (-)
WSB/EiJ	ENSIUOG00005052624	protein coding gene	Chr2:86943342-86949783 (-)

Homology

• Gene Tree
  Or4b1c
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Or4b1c
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000080809 (Evidence)
• NCBI Gene
  258977

Representative Sequences			Length	Strain/Species
genomic	258977	NCBI Gene Model | MGI Sequence Detail	924	C57BL/6J
transcript	NR_160690	RefSeq | MGI Sequence Detail	924	C57BL/6
polypeptide	NP_667186	RefSeq | MGI Sequence Detail	307	Not Specified

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7276548

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42