Or4x12 Pseudogene Detail

Summary

• Symbol
  Or4x12
• Name
  olfactory receptor family 4 subfamily X member 12
• Synonyms
  GA_x6K02T2Q125-51518604-51517675, MOR228-1, Olfr1267-ps1, Or4x12-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3031101
  NCBI Gene: 258204
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:89915877-89916803 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031101	polymorphic pseudogene	Chr2:89915874-89916803 (-)
129S1/SvImJ	ENSMUSG00200053032	protein coding gene	Chr2:86972757-86973686 (-)
A/J	ENSMUSG00195047708	protein coding gene	Chr2:87027492-87028421 (-)
AKR/J	ENSMUSG00220051317	protein coding gene	Chr2:86913398-86914327 (-)
BALB/cJ	ENSMUSG00180054666	protein coding gene	Chr2:86928339-86929268 (-)
C3H/HeJ	ENSMUSG00175053776	protein coding gene	Chr2:87202233-87203162 (-)
C57BL/6NJ	ENSMUSG00215053285	protein coding gene	Chr2:87032244-87033173 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023933	protein coding gene	Chr2:84344166-84345076 (+)
CAST/EiJ	ENSTCUG00005051196	protein coding gene	Chr2:86441701-86442630 (-)
CBA/J	ENSMUSG00210039614	protein coding gene	Chr2:87213402-87214331 (-)
DBA/2J	ENSMUSG00185055120	protein coding gene	Chr2:86924439-86925368 (-)
FVB/NJ	ENSMUSG00205051174	protein coding gene	Chr2:86297267-86298196 (-)
JF1/MsJ	ENSUMUG00000010579	protein coding gene	Chr2:86786255-86787184 (-)
LP/J	ENSMUSG00230044050	protein coding gene	Chr2:88675158-88676087 (-)
NOD/ShiLtJ	ENSMUSG00190049675	protein coding gene	Chr2:86997653-86998582 (-)
NZO/HlLtJ	ENSMUSG00225049223	protein coding gene	Chr2:96591522-96592451 (-)
PWK/PhJ	ENSLUMG00010045348	protein coding gene	Chr2:86833071-86834000 (-)
SPRET/EiJ	ENSMSPG00010051939	protein coding gene	Chr2:88804432-88805361 (-)
WSB/EiJ	ENSIUOG00005052362	protein coding gene	Chr2:86827209-86828138 (-)

Homology

• Gene Tree
  Or4x12
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Or4x12
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3

• Ensembl
  ENSMUSG00000075067 (Evidence)
• NCBI Gene
  258204

Representative Sequences			Length	Strain/Species
genomic	258204	NCBI Gene Model | MGI Sequence Detail	927	C57BL/6J
transcript	NR_190798	RefSeq | MGI Sequence Detail	1127	C57BL/6
polypeptide	NP_001416741	RefSeq | MGI Sequence Detail	309	Not Specified

Other
Accession IDs

MGI:7276541, MGI:7785251

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42