Or4x12-ps1 Pseudogene Detail

Summary

• Symbol
  Or4x12-ps1
• Name
  olfactory receptor family 4 subfamily X member 12, pseudogene 1
• Synonyms
  GA_x6K02T2Q125-51518604-51517675, MOR228-1, Olfr1267-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3031101
  NCBI Gene: 258204
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:89915877-89916803 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031101	polymorphic pseudogene	Chr2:89915874-89916803 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0026120	protein coding gene	Chr2:91239764-91240865 (+)
A/J	MGP_AJ_G0026081	protein coding gene	Chr2:87629327-87630318 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0026093	protein coding gene	Chr2:87881957-87907204 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0023933	protein coding gene	Chr2:84344166-84345076 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0025821	protein coding gene	Chr2:97726532-97727286 (-)
DBA/2J	MGP_DBA2J_G0025955	protein coding gene	Chr2:87184944-87186054 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0026060	protein coding gene	Chr2:91401164-91403203 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0025042	protein coding gene	Chr2:87106166-87312722 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Or4x12-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Or4x12-ps1
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000075067 (Evidence)
• NCBI Gene
  258204

Representative Sequences			Length	Strain/Species
genomic	258204	NCBI Gene Model | MGI Sequence Detail	927	C57BL/6J

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42