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Or5d42-ps1 Pseudogene Detail
Summary
  • Symbol
    Or5d42-ps1
  • Name
    olfactory receptor family 5 subfamily D member 42, pseudogene 1
  • Synonyms
    GA_x6K02T2Q125-49738648-49737686, MOR174-17P, Olfr1171-ps1
Location &
Maps
more
  • Sequence Map
    Chr2:88083303-88084139 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 49.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    185 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3031005
 pseudogene Chr2:88083303-88084145 (-)
129S1/SvImJ ENSMUSG00200053859
 pseudogene Chr2:85133569-85139616 (-)
A/J ENSMUSG00195053846
 pseudogene Chr2:85212261-85218308 (-)
AKR/J ENSMUSG00220053076
 pseudogene Chr2:85117684-85123731 (-)
BALB/cJ ENSMUSG00180054862
 pseudogene Chr2:85139976-85146023 (-)
C3H/HeJ ENSMUSG00175054063
 pseudogene Chr2:85322858-85328905 (-)
C57BL/6NJ ENSMUSG00215054024
 pseudogene Chr2:85188441-85194488 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036962
 pseudogene Chr2:82322644-82323758 (-)
CAST/EiJ ENSTCUG00005052743
 pseudogene Chr2:84606407-84612450 (-)
CBA/J ENSMUSG00210040403
 pseudogene Chr2:85350712-85356759 (-)
DBA/2J ENSMUSG00185057268
 pseudogene Chr2:85136094-85142141 (-)
FVB/NJ ENSMUSG00205052375
 pseudogene Chr2:84493890-84499937 (-)
JF1/MsJ ENSUMUG00000037971
 pseudogene Chr2:84907184-84913616 (-)
LP/J ENSMUSG00230046680
 pseudogene Chr2:86886969-86893016 (-)
NOD/ShiLtJ ENSMUSG00190051053
 pseudogene Chr2:85204258-85210305 (-)
NZO/HlLtJ ENSMUSG00225053595
 pseudogene Chr2:94803342-94809389 (-)
PWK/PhJ ENSLUMG00010052795
 pseudogene Chr2:84979518-84985953 (-)
SPRET/EiJ ENSMSPG00010052140
 pseudogene Chr2:86974003-86988946 (-)
WSB/EiJ ENSIUOG00005053515
 pseudogene Chr2:85015464-85021507 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Or5d42-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082010 Ensembl Gene Model | MGI Sequence Detail 837 C57BL/6J ±  kb
transcript ENSMUST00000118079 Ensembl | MGI Sequence Detail 837 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:7276443
References
more
  • Summaries
    All 14
    Phenotypes 6
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory