Olfr1169-ps1 Pseudogene Detail

Summary

• Symbol
  Olfr1169-ps1
• Name
  olfactory receptor 1169, pseudogene 1
• Synonyms
  GA_x6K02T2Q125-49682082-49682387, MOR177-17_p

• Feature Type
  pseudogene
• IDs
  MGI:3031003
  NCBI Gene: 404482
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:88027808-88028040 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031003	pseudogene	Chr2:88027808-88028113 (+)
129S1/SvImJ	ENSMUSG00200054006	pseudogene	Chr2:85078389-85078621 (+)
A/J	ENSMUSG00195054001	pseudogene	Chr2:85157084-85157316 (+)
AKR/J	ENSMUSG00220052667	pseudogene	Chr2:85062508-85062740 (+)
BALB/cJ	ENSMUSG00180054900	pseudogene	Chr2:85084803-85085035 (+)
C3H/HeJ	ENSMUSG00175054176	pseudogene	Chr2:85267441-85267673 (+)
C57BL/6NJ	ENSMUSG00215054034	pseudogene	Chr2:85133262-85133494 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210042521	pseudogene	Chr2:85295292-85295524 (+)
DBA/2J	ENSMUSG00185057132	pseudogene	Chr2:85080920-85081152 (+)
FVB/NJ	ENSMUSG00205052163	pseudogene	Chr2:84445892-84446124 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230046511	pseudogene	Chr2:86831796-86832028 (+)
NOD/ShiLtJ	ENSMUSG00190051226	pseudogene	Chr2:85149083-85149315 (+)
NZO/HlLtJ	ENSMUSG00225053491	pseudogene	Chr2:94748168-94748400 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Olfr1169-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Olfr1169-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000084405 (Evidence)
• NCBI Gene
  404482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084405	Ensembl Gene Model | MGI Sequence Detail	233	C57BL/6J
transcript	ENSMUST00000121437	Ensembl | MGI Sequence Detail	233	Not Applicable

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087