Or8k42-ps1 Pseudogene Detail

Summary

• Symbol
  Or8k42-ps1
• Name
  olfactory receptor family 8 subfamily K member 42, pseudogene 1
• Synonyms
  GA_x6K02T2Q125-47968791-47967887, MOR188-6P, Olfr1073-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030907
  NCBI Gene: 257989
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:86318250-86319150 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  36

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030907	pseudogene	Chr2:86318250-86319150 (-)
129S1/SvImJ	ENSMUSG00200054157	pseudogene	Chr2:83339341-83339818 (-)
129S1/SvImJ	ENSMUSG00200054151	pseudogene	Chr2:83339830-83340210 (-)
A/J	ENSMUSG00195053554	pseudogene	Chr2:83408096-83408573 (-)
A/J	ENSMUSG00195053545	pseudogene	Chr2:83408585-83408964 (-)
AKR/J	ENSMUSG00220052615	pseudogene	Chr2:83286820-83287297 (-)
AKR/J	ENSMUSG00220052604	pseudogene	Chr2:83287309-83287688 (-)
BALB/cJ	ENSMUSG00180054856	pseudogene	Chr2:83336273-83336652 (-)
BALB/cJ	ENSMUSG00180054858	pseudogene	Chr2:83335784-83336261 (-)
C3H/HeJ	ENSMUSG00175054125	pseudogene	Chr2:83473836-83474313 (-)
C3H/HeJ	ENSMUSG00175054116	pseudogene	Chr2:83474325-83474704 (-)
C57BL/6NJ	ENSMUSG00215053694	pseudogene	Chr2:83424436-83424913 (-)
C57BL/6NJ	ENSMUSG00215053688	pseudogene	Chr2:83424925-83425305 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037253	pseudogene	Chr2:80825666-80826551 (-)
CAST/EiJ	ENSTCUG00005052885	pseudogene	Chr2:82832286-82832763 (-)
CAST/EiJ	ENSTCUG00005052881	pseudogene	Chr2:82832775-82833155 (-)
CBA/J	ENSMUSG00210044027	pseudogene	Chr2:83501738-83502215 (-)
CBA/J	ENSMUSG00210044000	pseudogene	Chr2:83502227-83502606 (-)
DBA/2J	ENSMUSG00185057153	pseudogene	Chr2:83332021-83332498 (-)
DBA/2J	ENSMUSG00185057150	pseudogene	Chr2:83332510-83332889 (-)
FVB/NJ	ENSMUSG00205052992	pseudogene	Chr2:82662794-82663174 (-)
FVB/NJ	ENSMUSG00205053016	pseudogene	Chr2:82662304-82662782 (-)
JF1/MsJ	ENSUMUG00000036475	pseudogene	Chr2:83215195-83215672 (-)
JF1/MsJ	ENSUMUG00000036438	pseudogene	Chr2:83215684-83216064 (-)
LP/J	ENSMUSG00230045897	pseudogene	Chr2:85083496-85083875 (-)
LP/J	ENSMUSG00230045860	pseudogene	Chr2:85083007-85083484 (-)
NOD/ShiLtJ	ENSMUSG00190052035	pseudogene	Chr2:83397724-83398201 (-)
NOD/ShiLtJ	ENSMUSG00190052014	pseudogene	Chr2:83398213-83398592 (-)
NZO/HlLtJ	ENSMUSG00225053772	pseudogene	Chr2:92992770-92993247 (-)
NZO/HlLtJ	ENSMUSG00225053786	pseudogene	Chr2:92993259-92993638 (-)
PWK/PhJ	ENSLUMG00010052316	pseudogene	Chr2:83289387-83289767 (-)
PWK/PhJ	ENSLUMG00010052333	pseudogene	Chr2:83288898-83289375 (-)
SPRET/EiJ	ENSMSPG00010052101	pseudogene	Chr2:85229561-85230038 (-)
SPRET/EiJ	ENSMSPG00010052099	pseudogene	Chr2:85230050-85230430 (-)
WSB/EiJ	ENSIUOG00005053412	pseudogene	Chr2:83285501-83285979 (-)
WSB/EiJ	ENSIUOG00005053409	pseudogene	Chr2:83285991-83286371 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Or8k42-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000082547 (Evidence), ENSMUSG00000111518 (Evidence)
• NCBI Gene
  257989

Representative Sequences			Length	Strain/Species
genomic	257989	NCBI Gene Model | MGI Sequence Detail	901	C57BL/6J

Other
Accession IDs

MGI:7276339

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42