Olfr1007-ps1 Pseudogene Detail

Summary

• Symbol
  Olfr1007-ps1
• Name
  olfactory receptor 1007, pseudogene 1
• Synonyms
  GA_x6K02T2Q125-47164494-47164625, Gm5020

• Feature Type
  pseudogene
• IDs
  MGI:3030841
  NCBI Gene: 257812
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:85513606-85513737 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.68 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030841	pseudogene	Chr2:85513606-85513743 (+)
129S1/SvImJ	ENSMUSG00200053956	pseudogene	Chr2:82534611-82534748 (+)
A/J	ENSMUSG00195053698	pseudogene	Chr2:82629115-82629252 (+)
AKR/J	ENSMUSG00220053162	pseudogene	Chr2:82507867-82508004 (+)
BALB/cJ	ENSMUSG00180054956	pseudogene	Chr2:82556896-82557033 (+)
C3H/HeJ	ENSMUSG00175054331	pseudogene	Chr2:82694932-82695069 (+)
C57BL/6NJ	ENSMUSG00215054007	pseudogene	Chr2:82619733-82619870 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052673	pseudogene	Chr2:82055279-82055416 (+)
CBA/J	ENSMUSG00210043728	pseudogene	Chr2:82722852-82722989 (+)
DBA/2J	ENSMUSG00185057202	pseudogene	Chr2:82553101-82553238 (+)
FVB/NJ	ENSMUSG00205052558	pseudogene	Chr2:81928249-81928386 (+)
JF1/MsJ	ENSUMUG00000033162	pseudogene	Chr2:82479038-82479175 (+)
LP/J	ENSMUSG00230045388	pseudogene	Chr2:84304147-84304284 (+)
NOD/ShiLtJ	ENSMUSG00190052349	pseudogene	Chr2:82618826-82618963 (+)
NZO/HlLtJ	ENSMUSG00225053241	pseudogene	Chr2:92213926-92214063 (+)
PWK/PhJ	ENSLUMG00010051915	pseudogene	Chr2:82496351-82496488 (+)
SPRET/EiJ	ENSMSPG00010052201	pseudogene	Chr2:84458696-84458833 (+)
WSB/EiJ	ENSIUOG00005053395	pseudogene	Chr2:82548959-82549096 (+)

Homology

• Gene Tree
  Olfr1007-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Olfr1007-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000110855 (Evidence)
• NCBI Gene
  257812

Representative Sequences			Length	Strain/Species
genomic	257812	NCBI Gene Model | MGI Sequence Detail	132	C57BL/6J

Other
Accession IDs

MGI:3648446

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087