Or11a3-ps1 Pseudogene Detail

Summary

• Symbol
  Or11a3-ps1
• Name
  olfactory receptor family 11 subfamily A member 3, pseudogene 1
• Synonyms
  GA_x6K02T2PSCP-1717297-1717934, MOR121-3P, Olfr755-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030589
  NCBI Gene: 258049
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:37588219-37588978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030589	pseudogene	Chr17:37587539-37588996 (+)
129S1/SvImJ	ENSMUSG00200051661	pseudogene	Chr17:33042323-33043780 (+)
A/J	ENSMUSG00195048389	pseudogene	Chr17:34252055-34253512 (+)
AKR/J	ENSMUSG00220052516	pseudogene	Chr17:32988878-32990334 (+)
BALB/cJ	ENSMUSG00180044931	pseudogene	Chr17:33735137-33736594 (+)
C3H/HeJ	ENSMUSG00175044049	pseudogene	Chr17:32929356-32930812 (+)
C57BL/6NJ	ENSMUSG00215053545	pseudogene	Chr17:32885918-32887375 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052429	pseudogene	Chr17:34121628-34123085 (+)
CBA/J	ENSMUSG00210052295	pseudogene	Chr17:32665570-32667026 (+)
DBA/2J	ENSMUSG00185054848	pseudogene	Chr17:35716032-35717489 (+)
FVB/NJ	ENSMUSG00205053628	pseudogene	Chr17:33244348-33245805 (+)
JF1/MsJ	ENSUMUG00000057503	pseudogene	Chr17:34668929-34670387 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190053913	pseudogene	Chr17:32927250-32928707 (+)
NZO/HlLtJ	ENSMUSG00225055113	pseudogene	Chr17:38796839-38798296 (+)
PWK/PhJ	ENSLUMG00010044456	pseudogene	Chr17:32550050-32551507 (+)
SPRET/EiJ	ENSMSPG00010050622	pseudogene	Chr17:33840369-33841830 (+)
WSB/EiJ	ENSIUOG00005052081	pseudogene	Chr17:33753618-33755075 (+)

Homology

• Gene Tree
  Or11a3-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092556 (Evidence)
• NCBI Gene
  258049

Representative Sequences			Length	Strain/Species
genomic	258049	NCBI Gene Model | MGI Sequence Detail	760	C57BL/6J

Other
Accession IDs

MGI:7277401

References

• Summaries
  All 8
• Earliest
  J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42

TSS for Or11a3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144584	Chr17:37586946-37586985 (+)	-1,253 bp