Or51a42 Gene Detail

Summary

• Symbol
  Or51a42
• Name
  olfactory receptor family 51 subfamily A member 42
• Synonyms
  GA_x6K02T2PBJ9-6793628-6792684, MOR13-2, Olfr643

• Feature Type
  protein coding gene
• IDs
  MGI:3030477
  NCBI Gene: 259081
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:103707863-103708807 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 54.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  236 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030477	protein coding gene	Chr7:103702807-103710652 (-)
129S1/SvImJ	ENSMUSG00200049027	protein coding gene	Chr7:90561113-90568964 (-)
A/J	ENSMUSG00195053477	protein coding gene	Chr7:95060853-95068703 (-)
AKR/J	ENSMUSG00220049022	protein coding gene	Chr7:88432109-88439965 (-)
BALB/cJ	ENSMUSG00180044374	protein coding gene	Chr7:91743958-91751798 (-)
C3H/HeJ	ENSMUSG00175047108	protein coding gene	Chr7:92384503-92392355 (-)
C57BL/6NJ	ENSMUSG00215051060	protein coding gene	Chr7:91550471-91558313 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030168	protein coding gene	Chr7:106475457-106633477 (-)
CAST/EiJ	ENSTCUG00005052764	protein coding gene	Chr7:94921973-94952723 (-)
CBA/J	ENSMUSG00210045702	protein coding gene	Chr7:92211924-92219790 (-)
DBA/2J	ENSMUSG00185055344	protein coding gene	Chr7:96563504-96571362 (-)
FVB/NJ	ENSMUSG00205044943	protein coding gene	Chr7:92195330-92203185 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230042521	protein coding gene	Chr7:102665781-102673630 (-)
NOD/ShiLtJ	ENSMUSG00190036474	protein coding gene	Chr7:92489263-92496598 (-)
NZO/HlLtJ	ENSMUSG00225014916	protein coding gene	Chr7:100851017-100858861 (-)
PWK/PhJ	ENSLUMG00010049681	protein coding gene	Chr7:90654242-90678467 (-)
SPRET/EiJ	ENSMSPG00010029244	protein coding gene	Chr7:91884880-91888290 (-)
WSB/EiJ	ENSIUOG00005048870	protein coding gene	Chr7:92795791-92803638 (-)

Homology

• MGI Vertebrate Homology
  Or51a42 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Or51a42
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Or51a42
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2
• UniProt
  5
• CCDS
  CCDS21605.1

• Ensembl
  ENSMUSG00000090219 (Evidence)
• NCBI Gene
  259081

Representative Sequences			Length	Strain/Species
genomic	259081	NCBI Gene Model | MGI Sequence Detail	945	C57BL/6J
transcript	NM_147077	RefSeq | MGI Sequence Detail	945	Not Specified
polypeptide	NP_667288	RefSeq | MGI Sequence Detail	314	Not Specified

Protein
Information

• UniProt
  5 Sequences
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR000276 G protein-coupled receptor, rhodopsin-like
  IPR000725 Olfactory receptor
  IPR050402 Olfactory receptor 51/52/56-like

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7277283

References

• Summaries
  All 23

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42