Or52b4j-ps1 Pseudogene Detail

Summary

• Symbol
  Or52b4j-ps1
• Name
  olfactory receptor family 52 subfamily B member 4J, pseudogene 1
• Synonyms
  GA_x6K02T2PBJ9-5242017-5242978, Olfr546-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030380
  NCBI Gene: 404405
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:102170538-102170863 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030380	pseudogene	Chr7:102169897-102170863 (+)
129S1/SvImJ	ENSMUSG00200050826	pseudogene	Chr7:89012241-89012566 (+)
A/J	ENSMUSG00195054828	pseudogene	Chr7:93518248-93518573 (+)
AKR/J	ENSMUSG00220051182	pseudogene	Chr7:86934725-86935050 (+)
BALB/cJ	ENSMUSG00180035975	pseudogene	Chr7:90190922-90191247 (+)
C3H/HeJ	ENSMUSG00175052050	pseudogene	Chr7:90845085-90845410 (+)
C57BL/6NJ	ENSMUSG00215037364	pseudogene	Chr7:90017754-90018079 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210026048	pseudogene	Chr7:90698462-90698787 (+)
DBA/2J	ENSMUSG00185057224	pseudogene	Chr7:95020962-95021287 (+)
FVB/NJ	ENSMUSG00205047432	pseudogene	Chr7:90689095-90689420 (+)
JF1/MsJ	ENSUMUG00000052038	pseudogene	Chr7:99924341-99924666 (+)
LP/J	ENSMUSG00230048591	pseudogene	Chr7:101122211-101122536 (+)
NOD/ShiLtJ	ENSMUSG00190021935	pseudogene	Chr7:90957354-90957680 (+)
NZO/HlLtJ	ENSMUSG00225051601	pseudogene	Chr7:99356647-99356972 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010013031	pseudogene	Chr7:90418731-90419056 (+)
WSB/EiJ	ENSIUOG00005010676	pseudogene	Chr7:91283844-91284169 (+)

Homology

• Gene Tree
  Or52b4j-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Transgenic
  2
• Genomic Mutations
  2 involving Or52b4j-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000109906 (Evidence)
• NCBI Gene
  404405

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109906	Ensembl Gene Model | MGI Sequence Detail	326	C57BL/6J
transcript	ENSMUST00000210328	Ensembl | MGI Sequence Detail	326	Not Applicable

Other
Accession IDs

MGI:7277178

References

• Summaries
  All 16

  Phenotypes 10
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42