Or13s1-ps1 Pseudogene Detail

Summary

• Symbol
  Or13s1-ps1
• Name
  olfactory receptor family 13 subfamily S member 1, pseudogene 1
• Synonyms
  GA_x6K02T2PBJ9-42867402-42868274, Gm5030, MOR253-16_p, Olfr542-ps1

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3030376
  NCBI Gene: 257845
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:140301253-140302125 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 85.89 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030376	pseudogene	Chr7:140297386-140302125 (+)
129S1/SvImJ	ENSMUSG00200047070	pseudogene	Chr7:126862110-126866749 (+)
A/J	ENSMUSG00195041901	pseudogene	Chr7:131344548-131349185 (+)
AKR/J	ENSMUSG00220037072	pseudogene	Chr7:124819389-124824014 (+)
BALB/cJ	ENSMUSG00180043286	pseudogene	Chr7:128036739-128041376 (+)
C3H/HeJ	ENSMUSG00175044035	pseudogene	Chr7:128765040-128769679 (+)
C57BL/6NJ	ENSMUSG00215048855	pseudogene	Chr7:128031564-128036203 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051665	pseudogene	Chr7:131340934-131345543 (+)
CBA/J	ENSMUSG00210032148	pseudogene	Chr7:128526980-128531605 (+)
DBA/2J	ENSMUSG00185018130	pseudogene	Chr7:132801600-132806237 (+)
FVB/NJ	ENSMUSG00205045916	pseudogene	Chr7:128443838-128448475 (+)
JF1/MsJ	ENSUMUG00000047838	pseudogene	Chr7:137880792-137885442 (+)
LP/J	ENSMUSG00230042873	pseudogene	Chr7:138965108-138969745 (+)
NOD/ShiLtJ	ENSMUSG00190031478	pseudogene	Chr7:128630534-128635169 (+)
NZO/HlLtJ	ENSMUSG00225052114	pseudogene	Chr7:137174346-137178983 (+)
PWK/PhJ	ENSLUMG00010049607	pseudogene	Chr7:127011935-127016518 (+)
SPRET/EiJ	ENSMSPG00010045238	pseudogene	Chr7:128437937-128442625 (+)
WSB/EiJ	ENSIUOG00005038861	pseudogene	Chr7:129368175-129372804 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Or13s1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000110199 (Evidence), ENSMUSG00000121423 (Evidence)
• NCBI Gene
  257845

Representative Sequences			Length	Strain/Species
genomic	257845	NCBI Gene Model | MGI Sequence Detail	873	C57BL/6J

Other
Accession IDs

MGI:3647690, MGI:7277174

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42