Or13w1-ps1 Pseudogene Detail

Summary

• Symbol
  Or13w1-ps1
• Name
  olfactory receptor family 13 subfamily W member 1, pseudogene 1
• Synonyms
  GA_x6K02T2PBJ9-42518755-42519135, Olfr529-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030363
  NCBI Gene: 404401
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:139948476-139948854 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 85.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030363	pseudogene	Chr7:139948423-139950015 (+)
129S1/SvImJ	ENSMUSG00200047239	pseudogene	Chr7:126513156-126514748 (+)
A/J	ENSMUSG00195042568	pseudogene	Chr7:130995561-130997155 (+)
AKR/J	ENSMUSG00220037700	pseudogene	Chr7:124459844-124461433 (+)
BALB/cJ	ENSMUSG00180043348	pseudogene	Chr7:127687793-127689385 (+)
C3H/HeJ	ENSMUSG00175045606	pseudogene	Chr7:128416062-128417654 (+)
C57BL/6NJ	ENSMUSG00215048832	pseudogene	Chr7:127682570-127684162 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051130	pseudogene	Chr7:130964318-130965946 (+)
CBA/J	ENSMUSG00210030918	pseudogene	Chr7:128141725-128143321 (+)
DBA/2J	ENSMUSG00185018102	pseudogene	Chr7:132452621-132454213 (+)
FVB/NJ	ENSMUSG00205045520	pseudogene	Chr7:128139389-128140981 (+)
JF1/MsJ	ENSUMUG00000047735	pseudogene	Chr7:137539514-137541141 (+)
LP/J	ENSMUSG00230043478	pseudogene	Chr7:138616138-138617730 (+)
NOD/ShiLtJ	ENSMUSG00190031599	pseudogene	Chr7:128281573-128283168 (+)
NZO/HlLtJ	ENSMUSG00225052317	pseudogene	Chr7:136825387-136826979 (+)
PWK/PhJ	ENSLUMG00010048916	pseudogene	Chr7:126673357-126674953 (+)
SPRET/EiJ	ENSMSPG00010044293	pseudogene	Chr7:128057269-128058893 (+)
WSB/EiJ	ENSIUOG00005036426	pseudogene	Chr7:128983402-128985000 (+)

Homology

• Gene Tree
  Or13w1-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Or13w1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000110257 (Evidence)
• NCBI Gene
  404401

Representative Sequences			Length	Strain/Species
genomic	404401	NCBI Gene Model | MGI Sequence Detail	379	C57BL/6J

Other
Accession IDs

MGI:7277159

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42