Or13m2 Pseudogene Detail

Summary

• Symbol
  Or13m2
• Name
  olfactory receptor family 13 subfamily M member 2
• Synonyms
  GA_x6K02T2P3E9-4759141-4758206, MOR257-6, Olfr451-ps1, Or13m2-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3030285
  NCBI Gene: 258017
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:42777677-42778609 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 20.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030285	polymorphic pseudogene	Chr6:42777677-42778612 (+)
129S1/SvImJ	ENSMUSG00200044571	protein coding gene	Chr6:39836782-39837717 (+)
A/J	ENSMUSG00195034003	protein coding gene	Chr6:39805584-39806519 (+)
AKR/J	ENSMUSG00220008408	protein coding gene	Chr6:39407609-39408544 (+)
BALB/cJ	ENSMUSG00180042583	protein coding gene	Chr6:39933979-39934914 (+)
C3H/HeJ	ENSMUSG00175046032	protein coding gene	Chr6:39762966-39763901 (+)
C57BL/6NJ	ENSMUSG00215046839	protein coding gene	Chr6:39888981-39889916 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008956	polymorphic pseudogene	Chr6:37415514-37416448 (+)
CAST/EiJ	ENSTCUG00005025582	protein coding gene	Chr6:39350297-39351232 (+)
CBA/J	ENSMUSG00210047965	protein coding gene	Chr6:39812742-39813677 (+)
DBA/2J	ENSMUSG00185040121	protein coding gene	Chr6:39915221-39916156 (+)
FVB/NJ	ENSMUSG00205047913	protein coding gene	Chr6:39816746-39817681 (+)
JF1/MsJ	ENSUMUG00000006117	protein coding gene	Chr6:39445000-39445935 (+)
LP/J	ENSMUSG00230015181	protein coding gene	Chr6:40838862-40839797 (+)
NOD/ShiLtJ	ENSMUSG00190026599	protein coding gene	Chr6:39721150-39722085 (+)
NZO/HlLtJ	ENSMUSG00225017609	protein coding gene	Chr6:42821532-42822467 (+)
PWK/PhJ	ENSLUMG00010037971	protein coding gene	Chr6:39264262-39265197 (+)
SPRET/EiJ	ENSMSPG00010024963	protein coding gene	Chr6:39963540-39964475 (+)
WSB/EiJ	ENSIUOG00005027590	protein coding gene	Chr6:40060945-40061880 (+)

Homology

• Gene Tree
  Or13m2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3

• Ensembl
  ENSMUSG00000108058 (Evidence)
• NCBI Gene
  258017

Representative Sequences			Length	Strain/Species
genomic	258017	NCBI Gene Model | MGI Sequence Detail	933	C57BL/6J
transcript	NM_001429693	RefSeq | MGI Sequence Detail	1125	Not Specified
polypeptide	NP_001416622	RefSeq | MGI Sequence Detail	311	Not Specified

Other
Accession IDs

MGI:7277077, MGI:7785275

References

• Summaries
  All 9
• Earliest
  J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42

TSS for Or13m2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56050	Chr6:42777583-42777585 (+)	-93 bp