Or10aa4-ps1 Pseudogene Detail

Summary

• Symbol
  Or10aa4-ps1
• Name
  olfactory receptor family 10 subfamily AA member 4, pseudogene 1
• Synonyms
  GA_x6K02T2P20D-21123424-21122522, Gm5033, Olfr431-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030265
  NCBI Gene: 257851
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:173879564-173880107 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 80.86 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030265	pseudogene	Chr1:173879198-173880107 (+)
129S1/SvImJ	ENSMUSG00200047182	pseudogene	Chr1:171726758-171727301 (+)
A/J	ENSMUSG00195048832	pseudogene	Chr1:171089304-171089841 (+)
AKR/J	ENSMUSG00220032426	pseudogene	Chr1:170722433-170722970 (+)
BALB/cJ	ENSMUSG00180046261	pseudogene	Chr1:171304657-171305200 (+)
C3H/HeJ	ENSMUSG00175047743	pseudogene	Chr1:171480893-171481436 (+)
C57BL/6NJ	ENSMUSG00215044739	pseudogene	Chr1:170840124-170840667 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037057	pseudogene	Chr1:164255826-164256373 (+)
CAST/EiJ	ENSTCUG00005047253	pseudogene	Chr1:169428973-169429516 (+)
CBA/J	ENSMUSG00210042403	pseudogene	Chr1:171143716-171144253 (+)
DBA/2J	ENSMUSG00185031692	pseudogene	Chr1:175756466-175757003 (+)
FVB/NJ	ENSMUSG00205040150	pseudogene	Chr1:170305995-170306532 (+)
JF1/MsJ	ENSUMUG00000022174	pseudogene	Chr1:174554632-174555175 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040502	pseudogene	Chr1:171156337-171156880 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035891	pseudogene	Chr1:169866783-169867320 (+)
SPRET/EiJ	ENSMSPG00010048941	pseudogene	Chr1:173524102-173524639 (+)
WSB/EiJ	ENSIUOG00005040399	pseudogene	Chr1:170317504-170318047 (+)

Homology

• Gene Tree
  Or10aa4-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Or10aa4-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102603 (Evidence)
• NCBI Gene
  257851

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102603	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000192435	Ensembl | MGI Sequence Detail	544	Not Applicable

Other
Accession IDs

MGI:3647998, MGI:7277059

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42