Or6h1-ps1 Pseudogene Detail

Summary

• Symbol
  Or6h1-ps1
• Name
  olfactory receptor family 6 subfamily H member 1, pseudogene 1
• Synonyms
  GA_x6K02T2P20D-21084020-21083619, Olfr428-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3030262
  NCBI Gene: 404386
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:173922536-173922927 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030262	pseudogene	Chr1:173922533-173922998 (+)
129S1/SvImJ	ENSMUSG00200047189	pseudogene	Chr1:171775094-171775559 (+)
A/J	ENSMUSG00195048842	pseudogene	Chr1:171128253-171128728 (+)
AKR/J	ENSMUSG00220032453	pseudogene	Chr1:170761395-170761896 (+)
BALB/cJ	ENSMUSG00180046275	pseudogene	Chr1:171352992-171353457 (+)
C3H/HeJ	ENSMUSG00175047777	pseudogene	Chr1:171529230-171529695 (+)
C57BL/6NJ	ENSMUSG00215044724	pseudogene	Chr1:170883099-170883564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037058	pseudogene	Chr1:164297009-164297486 (+)
CAST/EiJ	ENSTCUG00005047236	pseudogene	Chr1:169471957-169472422 (+)
CBA/J	ENSMUSG00210042441	pseudogene	Chr1:171182692-171183193 (+)
DBA/2J	ENSMUSG00185031702	pseudogene	Chr1:175795428-175795929 (+)
FVB/NJ	ENSMUSG00205040172	pseudogene	Chr1:170344945-170345419 (+)
JF1/MsJ	ENSUMUG00000022149	pseudogene	Chr1:174597630-174598095 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040540	pseudogene	Chr1:171204672-171205137 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035910	pseudogene	Chr1:169905731-169906221 (+)
SPRET/EiJ	ENSMSPG00010048945	pseudogene	Chr1:173562864-173563347 (+)
WSB/EiJ	ENSIUOG00005040502	pseudogene	Chr1:170360291-170360756 (+)

Homology

• Gene Tree
  Or6h1-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Or6h1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106975 (Evidence)
• NCBI Gene
  404386

Representative Sequences			Length	Strain/Species
genomic	404386	NCBI Gene Model | MGI Sequence Detail	392	C57BL/6J

Other
Accession IDs

MGI:7277055

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42