Or6k8 Pseudogene Detail

Summary

• Symbol
  Or6k8
• Name
  olfactory receptor family 6 subfamily K member 8
• Synonyms
  GA_x6K02T2P20D-21002372-21001425, GA_x6K02T2P20D-21006310-21006124, MOR105-3, Olfr421, Olfr421-ps1, Olfr422-ps1, Or6k8-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3030255
  NCBI Gene: 258715
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:173979047-173980096 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 80.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  19

• Strain-Specific Marker

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030255	polymorphic pseudogene	Chr1:173979047-173980096 (+)
129S1/SvImJ	ENSMUSG00200044592	protein coding gene	Chr1:171834971-171836020 (+)
A/J	ENSMUSG00195046668	protein coding gene	Chr1:171183570-171184619 (+)
AKR/J	ENSMUSG00220030503	protein coding gene	Chr1:170816773-170817822 (+)
BALB/cJ	ENSMUSG00180042302	protein coding gene	Chr1:171412856-171413905 (+)
C3H/HeJ	ENSMUSG00175045784	protein coding gene	Chr1:171589110-171590159 (+)
C57BL/6NJ	ENSMUSG00215044390	protein coding gene	Chr1:170939626-170940675 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008941	polymorphic pseudogene	Chr1:164357544-164358593 (+)
CAST/EiJ	ENSTCUG00005045425	protein coding gene	Chr1:169528453-169529502 (+)
CBA/J	ENSMUSG00210040134	protein coding gene	Chr1:171238049-171239098 (+)
DBA/2J	ENSMUSG00185029191	protein coding gene	Chr1:175850792-175851841 (+)
FVB/NJ	ENSMUSG00205026748	protein coding gene	Chr1:170400262-170401311 (+)
JF1/MsJ	ENSUMUG00000009533	protein coding gene	Chr1:174654163-174655212 (+)
LP/J	ENSMUSG00230032065	protein coding gene	Chr1:175428295-175429344 (+)
NOD/ShiLtJ	ENSMUSG00190039648	protein coding gene	Chr1:171264530-171265579 (+)
NZO/HlLtJ	ENSMUSG00225004741	protein coding gene	Chr1:179024583-179025632 (+)
PWK/PhJ	ENSLUMG00010028507	protein coding gene	Chr1:169961121-169962170 (+)
SPRET/EiJ	ENSMSPG00010044985	protein coding gene	Chr1:173618776-173619825 (+)
WSB/EiJ	ENSIUOG00005033761	protein coding gene	Chr1:170419647-170420696 (+)

Homology

• Gene Tree
  Or6k8
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Or6k8
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3
• CCDS
  CCDS48457.1

• Ensembl
  ENSMUSG00000091950 (Evidence)
• NCBI Gene
  258715

Representative Sequences			Length	Strain/Species
genomic	258715	NCBI Gene Model | MGI Sequence Detail	1050	C57BL/6J
transcript	NR_047667	RefSeq | MGI Sequence Detail	1050	C57BL/6
polypeptide	NP_666931	RefSeq | MGI Sequence Detail	315	Not Specified

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3030256, MGI:7277052, MGI:7785261

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42