Zfp422-ps Pseudogene Detail

Summary

• Symbol
  Zfp422-ps
• Name
  zinc finger protein 422, pseudogene
• Synonyms
  Krox-25-2, Zfp422-rs1

• Feature Type
  pseudogene
• IDs
  MGI:3028594
  NCBI Gene: 100416808
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:33524013-33524719 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM, cytoband B2
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028594	pseudogene	Chr17:33522623-33524837 (-)
129S1/SvImJ	ENSMUSG00200054034	pseudogene	Chr17:29228136-29228842 (-)
A/J	ENSMUSG00195054602	pseudogene	Chr17:30108626-30109306 (-)
AKR/J	ENSMUSG00220053952	pseudogene	Chr17:29136718-29137398 (-)
BALB/cJ	ENSMUSG00180051871	pseudogene	Chr17:29494763-29495469 (-)
C3H/HeJ	ENSMUSG00175053948	pseudogene	Chr17:29017666-29018346 (-)
C57BL/6NJ	ENSMUSG00215054662	pseudogene	Chr17:29066975-29067681 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052156	pseudogene	Chr17:30004939-30005647 (+)
CAST/EiJ	ENSTCUG00005051303	pseudogene	Chr17:30064093-30064801 (-)
CBA/J	ENSMUSG00210051171	pseudogene	Chr17:28844615-28845295 (-)
DBA/2J	ENSMUSG00185055277	pseudogene	Chr17:31514129-31514835 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000057577	pseudogene	Chr17:30770308-30771016 (-)
JF1/MsJ	ENSUMUG00000058021	pseudogene	Chr17:30711102-30711810 (+)
LP/J	ENSMUSG00230054919	pseudogene	Chr17:32626565-32627271 (-)
NOD/ShiLtJ	ENSMUSG00190054476	pseudogene	Chr17:28998891-28999597 (-)
NZO/HlLtJ	ENSMUSG00225055120	pseudogene	Chr17:34663537-34664243 (-)
PWK/PhJ	ENSLUMG00010053473	pseudogene	Chr17:28614452-28615160 (-)
SPRET/EiJ	ENSMSPG00010050398	pseudogene	Chr17:29759185-29759820 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Zfp422-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000091515 (Evidence)
• NCBI Gene
  100416808

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091515	Ensembl Gene Model | MGI Sequence Detail	707	C57BL/6J
transcript	ENSMUST00000182230	Ensembl | MGI Sequence Detail	707	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 8
• Earliest
  J:87787 Lee SK, et al., Molecular cloning, chromosomal mapping, and characteristic expression in tooth organ of rat and mouse Krox-25. Genomics. 2004 Feb;83(2):243-53
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Zfp422-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147435	Chr17:33524820-33524837 (-)	-110 bp