D630033A02Rik Gene Detail

Summary

• Symbol
  D630033A02Rik
• Name
  RIKEN cDNA D630033A02 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3028060
  NCBI Gene: 402753
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:122821311-122822460 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028060	lncRNA gene	Chr10:122821311-122822460 (-)
129S1/SvImJ	ENSMUSG00200027679	pseudogene	Chr10:119165337-119166818 (-)
A/J	ENSMUSG00195022342	pseudogene	Chr10:119606736-119608220 (-)
AKR/J	ENSMUSG00220015153	pseudogene	Chr10:119230660-119232144 (-)
BALB/cJ	ENSMUSG00180018516	pseudogene	Chr10:119597909-119599393 (-)
C3H/HeJ	ENSMUSG00175024930	pseudogene	Chr10:119604019-119605503 (-)
C57BL/6NJ	ENSMUSG00215020222	pseudogene	Chr10:119235074-119236555 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035358	pseudogene	Chr10:118558825-118560313 (-)
CBA/J	ENSMUSG00210021815	pseudogene	Chr10:119439635-119441119 (-)
DBA/2J	ENSMUSG00185009301	pseudogene	Chr10:119549458-119550943 (-)
FVB/NJ	ENSMUSG00205025833	pseudogene	Chr10:118865007-118866489 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230034574	pseudogene	Chr10:121487212-121488691 (-)
NOD/ShiLtJ	ENSMUSG00190019240	pseudogene	Chr10:119650829-119652312 (-)
NZO/HlLtJ	ENSMUSG00225038083	pseudogene	Chr10:125724856-125726338 (-)
PWK/PhJ	ENSLUMG00010013601	pseudogene	Chr10:119275046-119276552 (-)
SPRET/EiJ	ENSMSPG00010016444	pseudogene	Chr10:121166898-121168362 (-)
WSB/EiJ	ENSIUOG00005014708	pseudogene	Chr10:119262495-119263974 (-)

Homology

• Gene Tree
  D630033A02Rik
  

Expression

• Assay Results
  597
• cDNA Data
  28

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000112237 (Evidence)
• NCBI Gene
  402753

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112237	Ensembl Gene Model | MGI Sequence Detail	1150	C57BL/6J
transcript	ENSMUST00000218534	Ensembl | MGI Sequence Detail	1034	Not Applicable

Molecular
Reagents

• All nucleic 28

  cDNA 28

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for D630033A02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99658	Chr10:122822374-122822403 (-)	71 bp