C730036E19Rik Gene Detail

Summary

• Symbol
  C730036E19Rik
• Name
  RIKEN cDNA C730036E19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3028040
  NCBI Gene: 402734
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:151013785-151019846 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  335 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028040	lncRNA gene	Chr1:151008685-151019847 (+)
129S1/SvImJ	ENSMUSG00200003058	lncRNA gene	Chr1:148476571-148480885 (+)
A/J	ENSMUSG00195014048	lncRNA gene	Chr1:147825451-147829774 (+)
AKR/J	ENSMUSG00220006735	lncRNA gene	Chr1:147611555-147615842 (+)
BALB/cJ	ENSMUSG00180033473	lncRNA gene	Chr1:148031290-148035601 (+)
C3H/HeJ	ENSMUSG00175002897	lncRNA gene	Chr1:148077200-148081525 (+)
C57BL/6NJ	ENSMUSG00215003734	lncRNA gene	Chr1:147973418-147977728 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004522	lincRNA gene	Chr1:141894010-141898207 (+)
CAST/EiJ	ENSTCUG00005006294	lncRNA gene	Chr1:146602759-146607046 (+)
CBA/J	ENSMUSG00210035505	lncRNA gene	Chr1:147978046-147982369 (+)
DBA/2J	ENSMUSG00185048515	lncRNA gene	Chr1:152245953-152250264 (+)
FVB/NJ	ENSMUSG00205029388	lncRNA gene	Chr1:147136303-147140590 (+)
JF1/MsJ	ENSUMUG00000013148	lncRNA gene	Chr1:151413477-151417764 (+)
LP/J	ENSMUSG00230000438	lncRNA gene	Chr1:151801048-151805335 (+)
NOD/ShiLtJ	ENSMUSG00190012611	lncRNA gene	Chr1:147822588-147826929 (+)
NZO/HlLtJ	ENSMUSG00225006411	lncRNA gene	Chr1:155518042-155522356 (+)
PWK/PhJ	ENSLUMG00010031812	lncRNA gene	Chr1:146782201-146786423 (+)
SPRET/EiJ	ENSMSPG00010005445	lncRNA gene	Chr1:150139252-150143474 (+)
WSB/EiJ	ENSIUOG00005025208	lncRNA gene	Chr1:147416896-147421214 (+)

Homology

• Gene Tree
  C730036E19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving C730036E19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000102095 (Evidence)
• NCBI Gene
  402734

Representative Sequences			Length	Strain/Species
genomic	402734	NCBI Gene Model | MGI Sequence Detail	6062	C57BL/6J
transcript	NR_038011	RefSeq | MGI Sequence Detail	2640	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:220701 Li P, et al., A liver-enriched long non-coding RNA, lncLSTR, regulates systemic lipid metabolism in mice. Cell Metab. 2015 Mar 3;21(3):455-67