Foxo6os Gene Detail

Summary

• Symbol
  Foxo6os
• Name
  forkhead box O6, opposite strand
• Synonyms
  4732418A04Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3028036
  NCBI Gene: 402730
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:120148538-120161095 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.17 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028036	antisense lncRNA gene	Chr4:120148330-120161095 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003950	antisense lncRNA gene	Chr4:121529536-121544819 (+)
A/J	MGP_AJ_G0003931	antisense lncRNA gene	Chr4:116754469-116766953 (+)
AKR/J	MGP_AKRJ_G0003908	antisense lncRNA gene	Chr4:119296449-119309958 (+)
BALB/cJ	MGP_BALBcJ_G0003917	antisense lncRNA gene	Chr4:117371495-117383622 (+)
C3H/HeJ	MGP_C3HHeJ_G0003864	antisense lncRNA gene	Chr4:120852428-120869360 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004065	antisense lncRNA gene	Chr4:126118128-126133062 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003553	antisense lncRNA gene	Chr4:110843021-110856293 (+)
CAST/EiJ	MGP_CASTEiJ_G0003827	antisense lncRNA gene	Chr4:118199433-118213811 (+)
CBA/J	MGP_CBAJ_G0003857	antisense lncRNA gene	Chr4:129534670-129546778 (+)
DBA/2J	MGP_DBA2J_G0003873	antisense lncRNA gene	Chr4:117342600-117354832 (+)
FVB/NJ	MGP_FVBNJ_G0003892	antisense lncRNA gene	Chr4:115864244-115877718 (+)
LP/J	MGP_LPJ_G0003953	antisense lncRNA gene	Chr4:121666406-121681545 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003880	antisense lncRNA gene	Chr4:134396202-134408464 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004060	antisense lncRNA gene	Chr4:120373995-120386339 (+)
PWK/PhJ	MGP_PWKPhJ_G0003781	antisense lncRNA gene	Chr4:114274076-114287090 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003727	antisense lncRNA gene	Chr4:116811534-116829916 (+)
WSB/EiJ	MGP_WSBEiJ_G0003863	antisense lncRNA gene	Chr4:120384871-120398385 (+)

Homology

• Gene Tree
  Foxo6os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Foxo6os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000084929 (Evidence)
• NCBI Gene
  402730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084929	Ensembl Gene Model | MGI Sequence Detail	12558	C57BL/6J
transcript	ENSMUST00000152384	Ensembl | MGI Sequence Detail	2306	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Foxo6os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38782	Chr4:120148540-120148551 (+)	8 bp