Foxo6os Gene Detail

Summary

• Symbol
  Foxo6os
• Name
  forkhead box O6, opposite strand
• Synonyms
  4732418A04Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3028036
  NCBI Gene: 402730
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:120148538-120161095 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.17 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  424 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028036	antisense lncRNA gene	Chr4:120148330-120161095 (+)
129S1/SvImJ	ENSMUSG00200014933	lncRNA gene	Chr4:114049515-114062041 (+)
A/J	ENSMUSG00195033440	lncRNA gene	Chr4:115289050-115301581 (+)
AKR/J	ENSMUSG00220022431	lncRNA gene	Chr4:114660855-114673414 (+)
BALB/cJ	ENSMUSG00180047564	lncRNA gene	Chr4:113349433-113361770 (+)
C3H/HeJ	ENSMUSG00175025928	lncRNA gene	Chr4:114362551-114374885 (+)
C57BL/6NJ	ENSMUSG00215039914	lncRNA gene	Chr4:115487248-115499801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003553	antisense lncRNA gene	Chr4:110843021-110856293 (+)
CAST/EiJ	ENSTCUG00005046815	lncRNA gene	Chr4:114162527-114175368 (+)
CBA/J	ENSMUSG00210052701	lncRNA gene	Chr4:113969023-113981366 (+)
DBA/2J	ENSMUSG00185049121	lncRNA gene	Chr4:115524081-115536417 (+)
FVB/NJ	ENSMUSG00205029635	lncRNA gene	Chr4:113443083-113455777 (+)
JF1/MsJ	ENSUMUG00000025516	lncRNA gene	Chr4:115434122-115447032 (+)
LP/J	ENSMUSG00230046551	lncRNA gene	Chr4:118867231-118879757 (+)
NOD/ShiLtJ	ENSMUSG00190044953	lncRNA gene	Chr4:113362429-113374761 (+)
NZO/HlLtJ	ENSMUSG00225016995	lncRNA gene	Chr4:124418207-124430760 (+)
PWK/PhJ	ENSLUMG00010047203	lncRNA gene	Chr4:112847280-112860195 (+)
SPRET/EiJ	ENSMSPG00010043186	lncRNA gene	Chr4:114933426-114946103 (+)
WSB/EiJ	ENSIUOG00005048657	lncRNA gene	Chr4:113658979-113671495 (+)

Homology

• Gene Tree
  Foxo6os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Foxo6os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000084929 (Evidence)
• NCBI Gene
  402730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084929	Ensembl Gene Model | MGI Sequence Detail	12558	C57BL/6J
transcript	ENSMUST00000152384	Ensembl | MGI Sequence Detail	2306	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Foxo6os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38782	Chr4:120148540-120148551 (+)	8 bp