D030007L05Rik Gene Detail

Summary

• Symbol
  D030007L05Rik
• Name
  RIKEN cDNA D030007L05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026977
  NCBI Gene: 399627
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:70786184-70804125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  763 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026977	lncRNA gene	Chr13:70786184-70804125 (+)
129S1/SvImJ	ENSMUSG00200013926	lncRNA gene	Chr13:65162030-65167854 (+)
A/J	ENSMUSG00195029525	lncRNA gene	Chr13:65795307-65801142 (+)
AKR/J	ENSMUSG00220038317	lncRNA gene	Chr13:64384191-64390026 (+)
BALB/cJ	ENSMUSG00180029768	lncRNA gene	Chr13:66293759-66299594 (+)
C3H/HeJ	ENSMUSG00175008583	lncRNA gene	Chr13:66567116-66572951 (+)
C57BL/6NJ	ENSMUSG00215015102	lncRNA gene	Chr13:66325869-66331704 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011949	lncRNA gene	Chr13:65878843-65885225 (+)
CBA/J	ENSMUSG00210009880	lncRNA gene	Chr13:65889995-65895830 (+)
DBA/2J	ENSMUSG00185009320	lncRNA gene	Chr13:69586197-69592032 (+)
FVB/NJ	ENSMUSG00205028558	lncRNA gene	Chr13:65276434-65282269 (+)
JF1/MsJ	ENSUMUG00000035671	lncRNA gene	Chr13:69315483-69321318 (+)
LP/J	ENSMUSG00230033871	lncRNA gene	Chr13:79504514-79510327 (+)
NOD/ShiLtJ	ENSMUSG00190039010	lncRNA gene	Chr13:65907406-65913241 (+)
NZO/HlLtJ	ENSMUSG00225028549	lncRNA gene	Chr13:71994691-72000526 (+)
PWK/PhJ	ENSLUMG00010012888	lncRNA gene	Chr13:65384243-65390079 (+)
SPRET/EiJ	ENSMSPG00010032004	lncRNA gene	Chr13:66285869-66291719 (+)
WSB/EiJ	ENSIUOG00005022707	lncRNA gene	Chr13:64804197-64810020 (+)

Homology

• Gene Tree
  D030007L05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000113334 (Evidence)
• NCBI Gene
  399627

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113334	Ensembl Gene Model | MGI Sequence Detail	17942	C57BL/6J
transcript	ENSMUST00000374675	Ensembl | MGI Sequence Detail	1917	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for D030007L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120299	Chr13:70798260-70798268 (+)	12,080 bp
Tssr120300	Chr13:70798301-70798338 (+)	12,136 bp