A930027P06Rik Gene Detail

Summary

• Symbol
  A930027P06Rik
• Name
  RIKEN cDNA A930027P06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026956
  NCBI Gene: 399619
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:18126523-18129497 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026956	lncRNA gene	Chr13:18126523-18129497 (+)
129S1/SvImJ	ENSMUSG00200014799	unclassified gene	Chr13:15365510-15368484 (+)
A/J	ENSMUSG00195040597	unclassified gene	Chr13:14476391-14479365 (+)
AKR/J	ENSMUSG00220033565	unclassified gene	Chr13:14397347-14400302 (+)
BALB/cJ	ENSMUSG00180036120	unclassified gene	Chr13:14831017-14833991 (+)
C3H/HeJ	ENSMUSG00175035784	unclassified gene	Chr13:14932782-14935756 (+)
C57BL/6NJ	ENSMUSG00215034865	unclassified gene	Chr13:14882758-14885732 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013903	unclassified gene	Chr13:14970190-14973160 (+)
CBA/J	ENSMUSG00210032313	unclassified gene	Chr13:14792721-14795695 (+)
DBA/2J	ENSMUSG00185013881	unclassified gene	Chr13:15494058-15497032 (+)
FVB/NJ	ENSMUSG00205051462	unclassified gene	Chr13:14651553-14654530 (+)
JF1/MsJ	ENSUMUG00000021468	unclassified gene	Chr13:15218311-15221266 (+)
LP/J	ENSMUSG00230036798	unclassified gene	Chr13:24896476-24899450 (+)
NOD/ShiLtJ	ENSMUSG00190023240	unclassified gene	Chr13:14756154-14759128 (+)
NZO/HlLtJ	ENSMUSG00225032614	unclassified gene	Chr13:18645802-18648776 (+)
PWK/PhJ	ENSLUMG00010030206	unclassified gene	Chr13:14196870-14199827 (+)
SPRET/EiJ	ENSMSPG00010020466	unclassified gene	Chr13:13846676-13849645 (+)
WSB/EiJ	ENSIUOG00005034628	unclassified gene	Chr13:14084352-14087327 (+)

Homology

• Gene Tree
  A930027P06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving A930027P06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113688 (Evidence)
• NCBI Gene
  399619

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113688	Ensembl Gene Model | MGI Sequence Detail	2975	C57BL/6J
transcript	AK044624	GenBank | ENA | DDBJ | MGI Sequence Detail	2976	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:71411 Arkell RM, et al., Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse. Mamm Genome. 2001 Sep;12(9):687-94
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44