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Trav13-5 Gene Detail
Summary
  • Symbol
    Trav13-5
  • Name
    T cell receptor alpha variable 13-5
  • Synonyms
    B230359F08Rik
Location &
Maps
more
  • Sequence Map
    Chr14:54032912-54033420 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.52 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026946
 gene segment Chr14:54032814-54033420 (+)
129S1/SvImJ ENSMUSG00200042884
 gene segment Chr14:42599439-42600045 (+)
A/J ENSMUSG00195033302
 gene segment Chr14:42823248-42823854 (+)
AKR/J ENSMUSG00220033713
 gene segment Chr14:42150477-42151083 (+)
BALB/cJ no annotation
C3H/HeJ ENSMUSG00175049573
 gene segment Chr14:44129485-44130091 (+)
C57BL/6NJ ENSMUSG00215049834
 gene segment Chr14:42355598-42356204 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002233
 gene segment Chr14:45243530-45244122 (+)
CAST/EiJ ENSTCUG00005049043
 gene segment Chr14:44151300-44151906 (+)
CBA/J ENSMUSG00210049521
 gene segment Chr14:42800694-42801300 (+)
DBA/2J ENSMUSG00185056297
 gene segment Chr14:47851083-47851689 (+)
FVB/NJ ENSMUSG00205048033
 gene segment Chr14:42218661-42219267 (+)
JF1/MsJ ENSUMUG00000052348
 gene segment Chr14:59135117-59135723 (+)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190049583
 gene segment Chr14:42560129-42560735 (+)
NZO/HlLtJ ENSMUSG00225052467
 gene segment Chr14:50263536-50264142 (+)
PWK/PhJ ENSLUMG00010052090
 gene segment Chr14:42033556-42034162 (+)
SPRET/EiJ ENSMSPG00010049376
 gene segment Chr14:45426870-45427475 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Synonyms
    TCRAV13S1, TCRAV22S1
  • Links
    NCBI Gene ID: 28661
    UniProt: A0A0B4J277

  • Chr Location
    14q11.2; chr14:22070557-22071208 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 219060 NCBI Gene Model | MGI Sequence Detail 509 C57BL/6J ±  kb
transcript AK153755 GenBank | ENA | DDBJ | MGI Sequence Detail 2614 C57BL/6J  
polypeptide A0A0B4J1K3 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051896 T cell receptor alpha variable region
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
Other
Accession IDs
less
MGI:6331098
References
more
  • Summaries
    All 19
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory