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5330438D12Rik Gene Detail
Summary
  • Symbol
    5330438D12Rik
  • Name
    RIKEN cDNA 5330438D12 gene
Location &
Maps
more
  • Sequence Map
    Chr10:116416787-116419418 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 64.81 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    53 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026931
 lncRNA gene Chr10:116344957-116451875 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036381
 pseudogene Chr10:119365206-119367439 (+)
A/J MGP_AJ_G0036367
 pseudogene Chr10:114773993-114776231 (+)
AKR/J MGP_AKRJ_G0036316
 pseudogene Chr10:118093531-118095765 (+)
BALB/cJ MGP_BALBcJ_G0036361
 pseudogene Chr10:115174252-115176487 (+)
C3H/HeJ MGP_C3HHeJ_G0036053
 pseudogene Chr10:118331113-118333343 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036867
 pseudogene Chr10:123510272-123512506 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033985
 pseudogene Chr10:109372411-109374546 (+)
CAST/EiJ MGP_CASTEiJ_G0035251
 pseudogene Chr10:118617970-118620195 (+)
CBA/J MGP_CBAJ_G0036026
 pseudogene Chr10:128345040-128347221 (+)
DBA/2J MGP_DBA2J_G0036197
 pseudogene Chr10:113912738-113914976 (+)
FVB/NJ MGP_FVBNJ_G0036151
 pseudogene Chr10:112868050-112870287 (+)
LP/J MGP_LPJ_G0036254
 pseudogene Chr10:119947560-119949795 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036154
 pseudogene Chr10:131241283-131243526 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036977
 pseudogene Chr10:118167944-118170174 (+)
PWK/PhJ MGP_PWKPhJ_G0034951
 pseudogene Chr10:114006823-114009020 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034768
 pseudogene Chr10:116976791-116979015 (+)
WSB/EiJ MGP_WSBEiJ_G0035443
 pseudogene Chr10:118345450-118348659 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    8
  • Genomic Mutations
    1 involving 5330438D12Rik
  • Find Mice (IMSR)
    3 strains or lines available
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
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  • All Sequences
    31
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 327824 NCBI Gene Model | MGI Sequence Detail 2632 C57BL/6J ±  kb
transcript AK077360 GenBank | ENA | DDBJ | MGI Sequence Detail 2244 C57BL/6J  
polypeptide Q8BPA5 UniProt | EBI | MGI Sequence Detail 224 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory