4933427D06Rik Gene Detail

Summary

• Symbol
  4933427D06Rik
• Name
  RIKEN cDNA 4933427D06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026922
  NCBI Gene: 232217
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:89073092-89087013 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 39.79 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  501 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026922	lncRNA gene	Chr6:89073092-89087021 (+)
129S1/SvImJ	ENSMUSG00200044751	lncRNA gene	Chr6:85868766-86027729 (+)
A/J	ENSMUSG00195039749	protein coding gene	Chr6:85722701-85736794 (+)
A/J	ENSMUSG00195042916	lncRNA gene	Chr6:85577357-85736722 (+)
AKR/J	ENSMUSG00220026444	protein coding gene	Chr6:84616321-84630415 (+)
AKR/J	ENSMUSG00220037068	lncRNA gene	Chr6:84470963-84630343 (+)
BALB/cJ	ENSMUSG00180014582	protein coding gene	Chr6:86095266-86109359 (+)
BALB/cJ	ENSMUSG00180017989	lncRNA gene	Chr6:85949893-86109287 (+)
C3H/HeJ	ENSMUSG00175027046	lncRNA gene	Chr6:91293946-91452954 (-)
C57BL/6NJ	ENSMUSG00215034544	lncRNA gene	Chr6:85958786-86118154 (+)
C57BL/6NJ	ENSMUSG00215017742	protein coding gene	Chr6:86104137-86118226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028635	protein coding gene	Chr6:85202391-85209460 (+)
CAST/EiJ	ENSTCUG00005018435	lncRNA gene	Chr6:85878243-86038158 (+)
CBA/J	ENSMUSG00210046061	lncRNA gene	Chr6:85767396-85926353 (+)
DBA/2J	ENSMUSG00185046311	lncRNA gene	Chr6:86314643-86473631 (+)
FVB/NJ	ENSMUSG00205042565	lncRNA gene	Chr6:84940920-85099901 (+)
JF1/MsJ	ENSUMUG00000047380	lncRNA gene	Chr6:85235939-85404229 (+)
LP/J	ENSMUSG00230050602	lncRNA gene	Chr6:87449452-87608399 (+)
NOD/ShiLtJ	ENSMUSG00190046647	lncRNA gene	Chr6:85386528-85545475 (+)
NZO/HlLtJ	ENSMUSG00225021450	lncRNA gene	Chr6:89414781-89573925 (+)
PWK/PhJ	ENSLUMG00010037286	lncRNA gene	Chr6:84660203-84815339 (+)
SPRET/EiJ	ENSMSPG00010045077	lncRNA gene	Chr6:86796194-86957250 (+)
WSB/EiJ	ENSIUOG00005035780	lncRNA gene	Chr6:86295309-86457198 (+)

Homology

• Gene Tree
  4933427D06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Spontaneous
  1
• Targeted
  4
• Genomic Mutations
  1 involving 4933427D06Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  21
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  3
• UniProt
  2
• CCDS
  CCDS20341.1

• Ensembl
  ENSMUSG00000055403 (Evidence)
• NCBI Gene
  232217

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055403	Ensembl Gene Model | MGI Sequence Detail	13922	C57BL/6J
transcript	ENSMUST00000068968	Ensembl | MGI Sequence Detail	2620	Not Applicable
polypeptide	Q8CDD1	UniProt | EBI | MGI Sequence Detail	203	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR031439 Proline-rich protein family 20

Molecular
Reagents

• All nucleic 21

  cDNA 21

  
  

  Microarray probesets 2

References

• Summaries
  All 26

  Developmental Gene Expression 1

  Phenotypes 9
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for 4933427D06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57614	Chr6:89073085-89073097 (+)	-1 bp
Tssr57615	Chr6:89073136-89073145 (+)	49 bp
Tssr57616	Chr6:89073155-89073160 (+)	66 bp