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Rdh18-ps Pseudogene Detail
Summary
  • Symbol
    Rdh18-ps
  • Name
    retinol dehydrogenase 18, pseudogene
  • Synonyms
    cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase
Location &
Maps
more
  • Sequence Map
    Chr10:127660085-127682434 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 75.97 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    107 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2687008
 pseudogene Chr10:127660085-127682434 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039790
 pseudogene Chr10:131469210-131488831 (+)
A/J MGP_AJ_G0039787
 pseudogene Chr10:126204385-126241048 (+)
AKR/J MGP_AKRJ_G0039716
 pseudogene Chr10:129931181-129952908 (+)
BALB/cJ MGP_BALBcJ_G0039762
 pseudogene Chr10:126605921-126625245 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040325
 pseudogene Chr10:135910587-135940361 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036946
 pseudogene Chr10:120130327-120198185 (+)
CAST/EiJ MGP_CASTEiJ_G0038534
 pseudogene Chr10:130749199-130785196 (+)
CBA/J MGP_CBAJ_G0039390
 pseudogene Chr10:141432108-141470730 (+)
DBA/2J MGP_DBA2J_G0039588
 pseudogene Chr10:125296462-125316551 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0039624
 pseudogene Chr10:132007148-132110246 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0040430
 pseudogene Chr10:130016263-130040091 (+)
PWK/PhJ MGP_PWKPhJ_G0038213
 pseudogene Chr10:125467354-125539781 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0038768
 pseudogene Chr10:130238836-130265381 (+)



Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 380674 NCBI Gene Model | MGI Sequence Detail 22350 C57BL/6J ±  kb
transcript NR_037604 RefSeq | MGI Sequence Detail 3648 C57BL/6  
polypeptide V9H0I4 UniProt | EBI | MGI Sequence Detail 167 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036291 NAD(P)-binding domain superfamily
    IPR002347 Short-chain dehydrogenase/reductase SDR
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory