Gm1758 Pseudogene Detail

Summary

• Symbol
  Gm1758
• Name
  predicted gene 1758
• Synonyms
  LOC385737

• Feature Type
  pseudogene
• IDs
  MGI:2686604
  NCBI Gene: 385737
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:14319964-14327085 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 9.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686604	pseudogene	Chr16:14319964-14327085 (+)
129S1/SvImJ	ENSMUSG00200048503	pseudogene	Chr16:11302838-11309951 (+)
A/J	ENSMUSG00195036576	pseudogene	Chr16:10867800-10874909 (+)
AKR/J	ENSMUSG00220045882	pseudogene	Chr16:11164643-11171756 (+)
BALB/cJ	ENSMUSG00180042861	pseudogene	Chr16:11111022-11118198 (+)
C3H/HeJ	ENSMUSG00175051547	pseudogene	Chr16:11278659-11285849 (+)
C57BL/6NJ	ENSMUSG00215041972	pseudogene	Chr16:10985012-10992134 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020481	protein coding gene	Chr16:11015689-11022853 (+)
CAST/EiJ	ENSTCUG00005046209	pseudogene	Chr16:11163013-11170012 (+)
CBA/J	ENSMUSG00210047568	pseudogene	Chr16:11295624-11302798 (+)
DBA/2J	ENSMUSG00185033508	pseudogene	Chr16:11241085-11248267 (+)
FVB/NJ	ENSMUSG00205046883	pseudogene	Chr16:11224845-11231958 (+)
JF1/MsJ	ENSUMUG00000054816	pseudogene	Chr16:11326512-11333869 (+)
LP/J	ENSMUSG00230046448	pseudogene	Chr16:13798276-13805389 (+)
NOD/ShiLtJ	ENSMUSG00190049825	pseudogene	Chr16:11359684-11366801 (+)
NZO/HlLtJ	ENSMUSG00225032365	pseudogene	Chr16:17043538-17050655 (+)
PWK/PhJ	ENSLUMG00010050848	pseudogene	Chr16:11187955-11195181 (+)
SPRET/EiJ	ENSMSPG00010048144	pseudogene	Chr16:11162972-11170158 (+)
WSB/EiJ	ENSIUOG00005043199	pseudogene	Chr16:11323589-11330757 (+)

Homology

• Gene Tree
  Gm1758
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090808 (Evidence)
• NCBI Gene
  385737

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090808	Ensembl Gene Model | MGI Sequence Detail	7122	C57BL/6J
transcript	ENSMUST00000164528	Ensembl | MGI Sequence Detail	600	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm1758:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137207	Chr16:14319736-14319747 (+)	-222 bp