9330188P03Rik Gene Detail

Summary

• Symbol
  9330188P03Rik
• Name
  RIKEN cDNA 9330188P03 gene
• Synonyms
  LOC380930

• Feature Type
  lncRNA gene
• IDs
  MGI:2686435
  NCBI Gene: 380930
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:105826983-105831363 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 56.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686435	lncRNA gene	Chr14:105826761-105869492 (+)
129S1/SvImJ	ENSMUSG00200018124	lncRNA gene	Chr14:94433396-94476002 (+)
A/J	ENSMUSG00195004217	lncRNA gene	Chr14:94523456-94566059 (+)
AKR/J	ENSMUSG00220001242	lncRNA gene	Chr14:93950859-93993467 (+)
BALB/cJ	ENSMUSG00180010531	lncRNA gene	Chr14:94007026-94049626 (+)
C3H/HeJ	ENSMUSG00175013855	lncRNA gene	Chr14:95898267-95940890 (+)
C57BL/6NJ	ENSMUSG00215007328	lncRNA gene	Chr14:94080937-94123539 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002824	lncRNA gene	Chr14:95456527-95499320 (+)
CBA/J	ENSMUSG00210014102	lncRNA gene	Chr14:94585682-94628285 (+)
DBA/2J	ENSMUSG00185011356	lncRNA gene	Chr14:99749892-99792494 (+)
FVB/NJ	ENSMUSG00205008935	lncRNA gene	Chr14:93687808-93739691 (+)
JF1/MsJ	ENSUMUG00000014255	lncRNA gene	Chr14:110759452-110802073 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001759	lncRNA gene	Chr14:94370305-94412912 (+)
NZO/HlLtJ	ENSMUSG00225025495	lncRNA gene	Chr14:102013465-102056064 (+)
PWK/PhJ	ENSLUMG00010001252	lncRNA gene	Chr14:93630419-93673029 (+)
SPRET/EiJ	ENSMSPG00010009853	lncRNA gene	Chr14:97635812-97678345 (+)
WSB/EiJ	ENSIUOG00005006629	lncRNA gene	Chr14:93564916-93615053 (+)

Homology

• Gene Tree
  9330188P03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9330188P03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  75
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000115149 (Evidence)
• NCBI Gene
  380930

Representative Sequences			Length	Strain/Species
genomic	380930	NCBI Gene Model | MGI Sequence Detail	4381	C57BL/6J
transcript	NR_102319	RefSeq | MGI Sequence Detail	1082	C57BL/6
polypeptide	C0LNQ3	UniProt | EBI | MGI Sequence Detail	37	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9330188P03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127091	Chr14:105826940-105826965 (+)	-30 bp
Tssr127092	Chr14:105826966-105826980 (+)	-10 bp
Tssr127093	Chr14:105827001-105827012 (+)	24 bp
Tssr127094	Chr14:105827050-105827057 (+)	71 bp