Gm1559 Gene Detail

Summary

• Symbol
  Gm1559
• Name
  predicted gene 1559
• Synonyms
  LOC380672

• Feature Type
  lncRNA gene
• IDs
  MGI:2686405
  NCBI Gene: 380672
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:85642077-85661494 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  537 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686405	lncRNA gene	Chr10:85642077-85661494 (-)
129S1/SvImJ	ENSMUSG00200029974	lncRNA gene	Chr10:82136334-82141008 (-)
A/J	ENSMUSG00195023398	lncRNA gene	Chr10:82586218-82590892 (-)
AKR/J	ENSMUSG00220022016	lncRNA gene	Chr10:82188512-82193186 (-)
BALB/cJ	ENSMUSG00180034476	lncRNA gene	Chr10:82589342-82594016 (-)
C3H/HeJ	ENSMUSG00175022721	lncRNA gene	Chr10:82465199-82469873 (-)
C57BL/6NJ	ENSMUSG00215026150	lncRNA gene	Chr10:82133649-82138323 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035366	lncRNA gene	Chr10:81897986-81902666 (-)
CBA/J	ENSMUSG00210034591	lncRNA gene	Chr10:82315931-82320605 (-)
DBA/2J	ENSMUSG00185042756	lncRNA gene	Chr10:82530004-82534678 (-)
FVB/NJ	ENSMUSG00205020398	lncRNA gene	Chr10:82186652-82191326 (-)
JF1/MsJ	ENSUMUG00000022970	lncRNA gene	Chr10:83907693-83912372 (-)
LP/J	ENSMUSG00230018643	lncRNA gene	Chr10:84422443-84427117 (-)
NOD/ShiLtJ	ENSMUSG00190018534	lncRNA gene	Chr10:82571882-82576556 (-)
NZO/HlLtJ	ENSMUSG00225053819	lncRNA gene	Chr10:88695137-88699811 (-)
PWK/PhJ	ENSLUMG00010023151	lncRNA gene	Chr10:82187436-82192117 (-)
SPRET/EiJ	ENSMSPG00010035927	lncRNA gene	Chr10:83541884-83546564 (+)
WSB/EiJ	ENSIUOG00005039137	lncRNA gene	Chr10:82282680-82287354 (-)

Homology

• Gene Tree
  Gm1559
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm1559
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000112826 (Evidence)
• NCBI Gene
  380672

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112826	Ensembl Gene Model | MGI Sequence Detail	19418	C57BL/6J
transcript	ENSMUST00000219596	Ensembl | MGI Sequence Detail	3117	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563