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Igkv4-53 Gene Detail
Summary
  • Symbol
    Igkv4-53
  • Name
    immunoglobulin kappa variable 4-53
  • Synonyms
    LOC384516, LOC385259
Location &
Maps
more
  • Sequence Map
    Chr6:69625808-69626338 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.56 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    196 from dbSNP Build 142
  • Strain Annotations
    28
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2686266
 gene segment Chr6:69625808-69626347 (-)
129S1/SvImJ ENSMUSG00200013648
 gene segment Chr6:66532297-66532836 (-)
129S1/SvImJ ENSMUSG00200010794
 protein coding gene Chr6:66532296-66532849 (-)
A/J ENSMUSG00195040794
 protein coding gene Chr6:66285228-66285781 (-)
A/J ENSMUSG00195044771
 gene segment Chr6:66285229-66285768 (-)
AKR/J ENSMUSG00220047116
 gene segment Chr6:65316831-65317370 (-)
BALB/cJ ENSMUSG00180041413
 gene segment Chr6:66641095-66641634 (-)
BALB/cJ ENSMUSG00180032217
 protein coding gene Chr6:66641094-66641647 (-)
C3H/HeJ ENSMUSG00175012006
 protein coding gene Chr6:110808666-110809219 (+)
C3H/HeJ ENSMUSG00175013434
 gene segment Chr6:110808679-110809218 (+)
C57BL/6NJ ENSMUSG00215042054
 protein coding gene Chr6:66615649-66616202 (-)
C57BL/6NJ ENSMUSG00215043084
 gene segment Chr6:66615650-66616189 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005038581
 gene segment Chr6:66813608-66814147 (-)
CBA/J ENSMUSG00210039386
 gene segment Chr6:66438456-66438995 (-)
CBA/J ENSMUSG00210039031
 protein coding gene Chr6:66438455-66439008 (-)
DBA/2J ENSMUSG00185044482
 gene segment Chr6:67003667-67004206 (-)
DBA/2J ENSMUSG00185038795
 protein coding gene Chr6:67003666-67004219 (-)
FVB/NJ ENSMUSG00205020285
 protein coding gene Chr6:65982135-65982688 (-)
FVB/NJ ENSMUSG00205035173
 gene segment Chr6:65982136-65982675 (-)
JF1/MsJ ENSUMUG00000040475
 gene segment Chr6:65986294-65986833 (-)
LP/J ENSMUSG00230021101
 protein coding gene Chr6:68123983-68124536 (-)
LP/J ENSMUSG00230029172
 gene segment Chr6:68123984-68124523 (-)
NOD/ShiLtJ ENSMUSG00190041815
 gene segment Chr6:65927070-65927609 (-)
NZO/HlLtJ ENSMUSG00225019146
 protein coding gene Chr6:70097858-70098411 (-)
NZO/HlLtJ ENSMUSG00225020686
 gene segment Chr6:70097859-70098398 (-)
PWK/PhJ ENSLUMG00010023520
 gene segment Chr6:65438739-65439279 (-)
SPRET/EiJ ENSMSPG00010031445
 gene segment Chr6:67456648-67457188 (-)
WSB/EiJ ENSIUOG00005025597
 gene segment Chr6:67293239-67293779 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    51
  • RefSeq
    3
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 546213 NCBI Gene Model | MGI Sequence Detail 531 C57BL/6J ±  kb
transcript BC106159 GenBank | ENA | DDBJ | MGI Sequence Detail 990 CZECHII  
polypeptide A0A0G2JFC6 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR003599 Immunoglobulin domain subtype
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:2686372
References
more
  • Summaries
    All 13
    Gene Ontology 1
  • Earliest
    J:95670 Caton AJ, et al., Many variable region genes are utilized in the antibody response of BALB/c mice to the influenza virus A/PR/8/34 hemagglutinin. J Immunol. 1991 Sep 1;147(5):1675-86
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory