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Igkv5-39 Gene Detail
Summary
  • Symbol
    Igkv5-39
  • Name
    immunoglobulin kappa variable 5-39
  • Synonyms
    LOC384415
Location &
Maps
more
  • Sequence Map
    Chr6:69877408-69877961 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.67 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    123 from dbSNP Build 142
  • Strain Annotations
    29
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2686255
 gene segment Chr6:69877408-69877961 (-)
129S1/SvImJ ENSMUSG00200010021
 protein coding gene Chr6:66783906-66784477 (-)
129S1/SvImJ ENSMUSG00200013953
 gene segment Chr6:66783905-66784458 (-)
A/J ENSMUSG00195042538
 protein coding gene Chr6:66536843-66537414 (-)
A/J ENSMUSG00195047340
 gene segment Chr6:66536842-66537395 (-)
AKR/J ENSMUSG00220046700
 gene segment Chr6:65587408-65587961 (-)
BALB/cJ ENSMUSG00180037303
 gene segment Chr6:66892714-66893267 (-)
BALB/cJ ENSMUSG00180034845
 protein coding gene Chr6:66892715-66893286 (-)
C3H/HeJ ENSMUSG00175012810
 gene segment Chr6:110557044-110557597 (+)
C3H/HeJ ENSMUSG00175012431
 protein coding gene Chr6:110557025-110557596 (+)
C57BL/6NJ ENSMUSG00215041210
 protein coding gene Chr6:66867266-66867837 (-)
C57BL/6NJ ENSMUSG00215042595
 gene segment Chr6:66867265-66867818 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000074
 gene segment Chr6:67039414-67039966 (-)
CAST/EiJ ENSTCUG00005037459
 gene segment Chr6:67015675-67016228 (-)
CBA/J ENSMUSG00210038601
 protein coding gene Chr6:66690086-66690657 (-)
CBA/J ENSMUSG00210042316
 gene segment Chr6:66690085-66690638 (-)
DBA/2J ENSMUSG00185043214
 gene segment Chr6:67255298-67255851 (-)
DBA/2J ENSMUSG00185042224
 protein coding gene Chr6:67255299-67255870 (-)
FVB/NJ ENSMUSG00205019920
 protein coding gene Chr6:66233767-66234338 (-)
FVB/NJ ENSMUSG00205033441
 gene segment Chr6:66233766-66234319 (-)
JF1/MsJ ENSUMUG00000041137
 gene segment Chr6:66331101-66331654 (-)
LP/J ENSMUSG00230030555
 gene segment Chr6:68375583-68376136 (-)
LP/J ENSMUSG00230022432
 protein coding gene Chr6:68375584-68376155 (-)
NOD/ShiLtJ ENSMUSG00190046695
 gene segment Chr6:66271854-66272407 (-)
NZO/HlLtJ ENSMUSG00225018983
 protein coding gene Chr6:70349451-70350022 (-)
NZO/HlLtJ ENSMUSG00225021363
 gene segment Chr6:70349450-70350003 (-)
PWK/PhJ ENSLUMG00010022623
 gene segment Chr6:65668388-65668941 (-)
SPRET/EiJ ENSMSPG00010030706
 gene segment Chr6:67724207-67724760 (-)
WSB/EiJ ENSIUOG00005026011
 gene segment Chr6:67545173-67545726 (-)



Homology
more
  • Human Ortholog
    IGKV6D-41, immunoglobulin kappa variable 6D-41 (non-functional)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV6D-41, immunoglobulin kappa variable 6D-41 (non-functional)
  • Synonyms
    A14
  • Links
    NCBI Gene ID: 28869
    UniProt: A0A0C4DH26

  • Chr Location
    2p11.2; chr2:90069662-90070240 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    45
  • RefSeq
    3
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 620017 NCBI Gene Model | MGI Sequence Detail 554 C57BL/6J ±  kb
transcript U48716 GenBank | ENA | DDBJ | MGI Sequence Detail 789 Not Specified  
polypeptide Q65ZI1 UniProt | EBI | MGI Sequence Detail 262 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory