About   Help   FAQ
Pate2 Gene Detail
Summary
  • Symbol
    Pate2
  • Name
    prostate and testis expressed 2
  • Synonyms
    LOC330921, mANLP1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685692
    NCBI Gene: 330921
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:35580935-35584185 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    13 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685692
 protein coding gene Chr9:35481580-35601614 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034539
 protein coding gene Chr9:33385693-33503514 (+)
A/J MGP_AJ_G0034517
 protein coding gene Chr9:32516284-32649139 (+)
AKR/J MGP_AKRJ_G0034443
 protein coding gene Chr9:33250837-33369724 (+)
BALB/cJ MGP_BALBcJ_G0034508
 protein coding gene Chr9:32434607-32551731 (+)
C3H/HeJ MGP_C3HHeJ_G0034220
 protein coding gene Chr9:33584111-33705951 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035029
 protein coding gene Chr9:34499735-34632212 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031959
 protein coding gene Chr9:31204021-31313295 (+)
CAST/EiJ MGP_CASTEiJ_G0033543
 protein coding gene Chr9:33490127-33610767 (+)
CBA/J MGP_CBAJ_G0034194
 protein coding gene Chr9:35656251-35784759 (+)
DBA/2J MGP_DBA2J_G0034351
 protein coding gene Chr9:32499981-32619742 (+)
FVB/NJ MGP_FVBNJ_G0034294
 protein coding gene Chr9:31917124-32040303 (+)
LP/J MGP_LPJ_G0034437
 protein coding gene Chr9:33628132-33752366 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034338
 protein coding gene Chr9:37221050-37366421 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035049
 protein coding gene Chr9:33197941-33326585 (+)
PWK/PhJ MGP_PWKPhJ_G0033248
 protein coding gene Chr9:32485034-32602411 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033083
 protein coding gene Chr9:33348141-33601460 (+)
WSB/EiJ MGP_WSBEiJ_G0033658
 protein coding gene Chr9:32971516-33104711 (+)



Homology
more
  • Human Ortholog
    PATE2, prostate and testis expressed 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PATE2, prostate and testis expressed 2
  • Synonyms
    C11orf38, PATE-M, UNQ3112
  • Links
    NCBI Gene ID: 399967
    neXtProt AC: NX_Q6UY27
    UniProt: Q6UY27

  • Chr Location
    11q24.2; chr11:125776113-125778828 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 2 alleles in 2 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male mice exhibit normal spermatozoa and fecundity.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    13
  • cDNA Data
    4
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 330921 NCBI Gene Model | MGI Sequence Detail 3251 C57BL/6J ±  kb
    transcript NM_001033421 RefSeq | MGI Sequence Detail 2215 C57BL/6  
    polypeptide Q3UW31 UniProt | EBI | MGI Sequence Detail 111 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4

      Microarray probesets 1
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 1
      Gene Ontology 2
      Phenotypes 9
    • Earliest
      J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
    • Latest
      J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory