Celrr Gene Detail

Summary

• Symbol
  Celrr
• Name
  cerebellum expressed regulatory RNA
• Synonyms
  AI848258, B230209K01Rik, Celr, LOC329240

• Feature Type
  lncRNA gene
• IDs
  MGI:2685664
  NCBI Gene: 98452
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:121015134-121048704 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 52.81 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  899 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685664	lncRNA gene	Chr1:121015087-121106170 (+)
129S1/SvImJ	ENSMUSG00200001855	lncRNA gene	Chr1:118486658-118576251 (+)
A/J	ENSMUSG00195004636	lncRNA gene	Chr1:117727597-117817203 (+)
AKR/J	ENSMUSG00220025534	lncRNA gene	Chr1:117543413-117633022 (+)
BALB/cJ	ENSMUSG00180012811	lncRNA gene	Chr1:118144152-118235223 (+)
C3H/HeJ	ENSMUSG00175019968	lncRNA gene	Chr1:117958552-118048132 (+)
C57BL/6NJ	ENSMUSG00215012836	lncRNA gene	Chr1:117922479-118013573 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004485	lincRNA gene	Chr1:113101465-113191189 (+)
CAST/EiJ	ENSTCUG00005006551	lncRNA gene	Chr1:116877480-116974240 (+)
CBA/J	ENSMUSG00210001350	lncRNA gene	Chr1:117787892-117877478 (+)
DBA/2J	ENSMUSG00185002232	lncRNA gene	Chr1:122231769-122321351 (+)
FVB/NJ	ENSMUSG00205013048	lncRNA gene	Chr1:117294238-117383820 (+)
JF1/MsJ	ENSUMUG00000029307	lncRNA gene	Chr1:121336772-121426670 (+)
LP/J	ENSMUSG00230009351	lncRNA gene	Chr1:121664340-121753909 (+)
NOD/ShiLtJ	ENSMUSG00190006805	lncRNA gene	Chr1:117773026-117862624 (+)
NZO/HlLtJ	ENSMUSG00225005243	lncRNA gene	Chr1:125456294-125547325 (+)
PWK/PhJ	ENSLUMG00010014609	lncRNA gene	Chr1:116939611-117029162 (+)
SPRET/EiJ	ENSMSPG00010016985	lncRNA gene	Chr1:119576648-119672934 (+)
WSB/EiJ	ENSIUOG00005003035	lncRNA gene	Chr1:117646212-117735672 (+)

Homology

• Gene Tree
  Celrr
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Celrr
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a null allele are viable.

Expression

• Assay Results
  600
• Tissues
  2
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  7

• Ensembl
  ENSMUSG00000097881 (Evidence)
• NCBI Gene
  98452

Representative Sequences			Length	Strain/Species
genomic	98452	NCBI Gene Model | MGI Sequence Detail	33571	C57BL/6J
transcript	NR_197184	RefSeq | MGI Sequence Detail	3433	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2138347

References

• Summaries
  All 21

  Developmental Gene Expression 2

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:386237 Ringel AR, et al., Temporal loss of En1 during limb development causes distinct phenotypes. Genes Dev. 2026 May 4;40(9-10):627-637

TSS for Celrr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8423	Chr1:121015112-121015153 (+)	-1 bp