Celrr Gene Detail

Summary

• Symbol
  Celrr
• Name
  cerebellum expressed regulatory RNA
• Synonyms
  AI848258, B230209K01Rik, Celr, LOC329240

• Feature Type
  lncRNA gene
• IDs
  MGI:2685664
  NCBI Gene: 98452
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:121015134-121048704 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 52.81 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685664	lncRNA gene	Chr1:121015116-121106170 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004954	lincRNA gene	Chr1:123904109-124001219 (+)
A/J	MGP_AJ_G0004936	lincRNA gene	Chr1:119468768-119557926 (+)
AKR/J	MGP_AKRJ_G0004913	lincRNA gene	Chr1:122965540-123057945 (+)
BALB/cJ	MGP_BALBcJ_G0004917	lincRNA gene	Chr1:119728671-119819577 (+)
C3H/HeJ	MGP_C3HHeJ_G0004866	lincRNA gene	Chr1:123140850-123234627 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005068	lincRNA gene	Chr1:128614467-128715170 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004485	lincRNA gene	Chr1:113101465-113191189 (+)
CAST/EiJ	MGP_CASTEiJ_G0004815	lincRNA gene	Chr1:121952786-122052332 (+)
CBA/J	MGP_CBAJ_G0004858	lincRNA gene	Chr1:133073952-133171034 (+)
DBA/2J	MGP_DBA2J_G0004877	lincRNA gene	Chr1:118481505-118572279 (+)
FVB/NJ	MGP_FVBNJ_G0004896	lincRNA gene	Chr1:117251397-117341468 (+)
LP/J	MGP_LPJ_G0004955	lincRNA gene	Chr1:125256121-125354238 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004881	lincRNA gene	Chr1:138785587-138882495 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005072	lincRNA gene	Chr1:122706013-122803731 (+)
PWK/PhJ	MGP_PWKPhJ_G0004767	lincRNA gene	Chr1:117482521-117573162 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004692	lincRNA gene	Chr1:121621653-121717606 (+)
WSB/EiJ	MGP_WSBEiJ_G0004862	lincRNA gene	Chr1:122586892-122681749 (+)

Homology

• Gene Tree
  Celrr
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving Celrr
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a null allele are viable.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  709
• Tissues
  2
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  3

• Ensembl
  ENSMUSG00000097881 (Evidence)
• NCBI Gene
  98452

Representative Sequences			Length	Strain/Species
genomic	98452	NCBI Gene Model | MGI Sequence Detail	33571	C57BL/6J
transcript	NR_038008	RefSeq | MGI Sequence Detail	1580	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2138347

References

• Summaries
  All 20

  Developmental Gene Expression 2

  Gene Ontology 1

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:233815 Lai KM, et al., Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. PLoS One. 2015;10(4):e0125522

TSS for Celrr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8423	Chr1:121015112-121015153 (+)	-1 bp