E130202H07Rik Gene Detail

Summary

• Symbol
  E130202H07Rik
• Name
  RIKEN cDNA E130202H07 gene
• Synonyms
  LOC328443

• Feature Type
  lncRNA gene
• IDs
  MGI:2685655
  NCBI Gene: 328443
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:76753198-76768424 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  640 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685655	lncRNA gene	Chr14:76753198-76768424 (+)
129S1/SvImJ	ENSMUSG00200010791	lncRNA gene	Chr14:65179918-65194506 (+)
A/J	ENSMUSG00195004223	lncRNA gene	Chr14:65331330-65345798 (+)
AKR/J	ENSMUSG00220007418	lncRNA gene	Chr14:64718412-64733485 (+)
BALB/cJ	ENSMUSG00180023512	lncRNA gene	Chr14:64923264-64937723 (+)
C3H/HeJ	ENSMUSG00175029972	lncRNA gene	Chr14:66739502-66754574 (+)
C57BL/6NJ	ENSMUSG00215020957	lncRNA gene	Chr14:64918215-64933286 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032426	lncRNA gene	Chr14:66576083-66590757 (+)
CBA/J	ENSMUSG00210010185	lncRNA gene	Chr14:65354127-65369195 (+)
DBA/2J	ENSMUSG00185023845	lncRNA gene	Chr14:70498780-70513854 (+)
FVB/NJ	ENSMUSG00205027340	lncRNA gene	Chr14:64749985-64765056 (+)
JF1/MsJ	ENSUMUG00000020377	lncRNA gene	Chr14:81648588-81663053 (+)
LP/J	ENSMUSG00230017437	lncRNA gene	Chr14:82529868-82544455 (+)
NOD/ShiLtJ	ENSMUSG00190011269	lncRNA gene	Chr14:65164680-65179748 (+)
NZO/HlLtJ	ENSMUSG00225025492	lncRNA gene	Chr14:72834376-72848840 (+)
PWK/PhJ	ENSLUMG00010010973	lncRNA gene	Chr14:64531591-64546660 (+)
SPRET/EiJ	ENSMSPG00010027853	lncRNA gene	Chr14:68179883-68201089 (+)
WSB/EiJ	ENSIUOG00005023570	lncRNA gene	Chr14:64509568-64524661 (+)

Homology

• Gene Tree
  E130202H07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving E130202H07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  114

• Ensembl
  ENSMUSG00000115092 (Evidence)
• NCBI Gene
  328443

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115092	Ensembl Gene Model | MGI Sequence Detail	15227	C57BL/6J
transcript	ENSMUST00000227784	Ensembl | MGI Sequence Detail	3869	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for E130202H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126731	Chr14:76753382-76753393 (+)	190 bp
Tssr126732	Chr14:76753416-76753437 (+)	229 bp