Ankrd34c MGI Mouse Gene Detail - MGI:2685617

Symbol

Ankrd34c
Name

ankyrin repeat domain 34C
Synonyms

B230218L05Rik, LOC330998

Feature Type

protein coding gene
IDs

MGI:2685617
NCBI Gene: 330998
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr9:89607298-89620528 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 47.24 cM
Mapping Data

2 experiments

SNPs within 2kb

355 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685617	protein coding gene	Chr9:89605986-89620787 (-)
129S1/SvImJ	ENSMUSG00200005206	protein coding gene	Chr9:86734091-86747303 (-)
A/J	ENSMUSG00195006841	protein coding gene	Chr9:86001411-86014625 (-)
AKR/J	ENSMUSG00220019758	protein coding gene	Chr9:86417635-86430867 (-)
BALB/cJ	ENSMUSG00180006761	protein coding gene	Chr9:86328012-86341228 (-)
C3H/HeJ	ENSMUSG00175004624	protein coding gene	Chr9:86639530-86652744 (-)
C57BL/6NJ	ENSMUSG00215006506	protein coding gene	Chr9:86614887-86628118 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032514	protein coding gene	Chr9:85701956-85712227 (-)
CAST/EiJ	ENSTCUG00005003742	protein coding gene	Chr9:86570983-86584310 (-)
CBA/J	ENSMUSG00210005577	protein coding gene	Chr9:86489003-86502249 (-)
DBA/2J	ENSMUSG00185001811	protein coding gene	Chr9:86636540-86649794 (-)
FVB/NJ	ENSMUSG00205004084	protein coding gene	Chr9:86797172-86810436 (-)
JF1/MsJ	ENSUMUG00000019618	protein coding gene	Chr9:86437079-86449152 (-)
LP/J	ENSMUSG00230007154	protein coding gene	Chr9:86840593-86853807 (-)
NOD/ShiLtJ	ENSMUSG00190010999	protein coding gene	Chr9:86280852-86294086 (-)
NZO/HlLtJ	ENSMUSG00225015598	protein coding gene	Chr9:86937451-86950699 (-)
PWK/PhJ	ENSLUMG00010002926	protein coding gene	Chr9:86347450-86359511 (-)
SPRET/EiJ	ENSMSPG00010002379	protein coding gene	Chr9:87980651-87992780 (-)
WSB/EiJ	ENSIUOG00005003417	protein coding gene	Chr9:85651541-85664805 (-)

Human Ortholog

ANKRD34C, ankyrin repeat domain 34C

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ANKRD34C, ankyrin repeat domain 34C
Links

HGNC:33888

NCBI Gene ID: 390616

UniProt: P0C6C1
Chr Location

15q25.1; chr15:79282722-79298239 (+) GRCh38

MGI Vertebrate Homology

Ankrd34c stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: ANKRD34C
Gene Tree

Ankrd34c

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

7
Chemically induced (other)

1
Endonuclease-mediated

2
Targeted

4
Genomic Mutations

1 involving Ankrd34c
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

28 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

5

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

37
RefSeq

6
UniProt

2
CCDS

CCDS23397.1

Ensembl

ENSMUSG00000047606 (Evidence)
NCBI Gene

330998

			Length	Strain/Species	Flank
genomic	ENSMUSG00000047606	Ensembl Gene Model \| MGI Sequence Detail	13231	C57BL/6J	± kb
transcript	ENSMUST00000060700	Ensembl \| MGI Sequence Detail	5457	Not Applicable
polypeptide	ENSMUSP00000056787	Ensembl \| MGI Sequence Detail	534	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000031507 ankyrin repeat domain-containing protein 34C

(term hierarchy)
InterPro Domains

IPR002110 Ankyrin repeat

IPR036770 Ankyrin repeat-containing domain superfamily

IPR042637 Ankyrin repeat domain-containing protein AN34A/B/C
GlyGen

Q8BLB8 1 site

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All nucleic 6

cDNA 6

Microarray probesets 1

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MGI:3034877

Summaries

All 22

Gene Ontology 1

Phenotypes 5
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Ankrd34c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90842	Chr9:89620467-89620516 (-)	36 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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