E130006D01Rik Gene Detail

Summary

• Symbol
  E130006D01Rik
• Name
  RIKEN cDNA E130006D01 gene
• Synonyms
  Gm16018, Hrtlincr5, LOC269683

• Feature Type
  lncRNA gene
• IDs
  MGI:2685527
  NCBI Gene: 269683
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:111882150-111909594 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 54.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  802 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685527	lncRNA gene	Chr5:111881540-111910074 (-)
129S1/SvImJ	ENSMUSG00200020656	protein coding gene	Chr5:105636713-105645434 (-)
129S1/SvImJ	ENSMUSG00200024871	lncRNA gene	Chr5:105636706-105664810 (-)
A/J	ENSMUSG00195042695	lncRNA gene	Chr5:105130927-105159042 (-)
A/J	ENSMUSG00195033450	protein coding gene	Chr5:105130934-105139675 (-)
AKR/J	ENSMUSG00220051961	lncRNA gene	Chr5:104655285-104683861 (-)
AKR/J	ENSMUSG00220049778	protein coding gene	Chr5:104655292-104664206 (-)
BALB/cJ	ENSMUSG00180044259	protein coding gene	Chr5:105277844-105305878 (-)
BALB/cJ	ENSMUSG00180046615	lncRNA gene	Chr5:105277837-105305821 (-)
C3H/HeJ	ENSMUSG00175046998	lncRNA gene	Chr5:107265367-107293692 (-)
C3H/HeJ	ENSMUSG00175043065	protein coding gene	Chr5:107265374-107274241 (-)
C57BL/6NJ	ENSMUSG00215039165	lncRNA gene	Chr5:105279230-105307332 (-)
C57BL/6NJ	ENSMUSG00215028298	protein coding gene	Chr5:105279237-105307389 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006144	lincRNA gene	Chr5:104662921-104690471 (-)
CAST/EiJ	ENSTCUG00005032367	lncRNA gene	Chr5:104460011-104487394 (-)
CBA/J	ENSMUSG00210030937	protein coding gene	Chr5:106017451-106045820 (-)
CBA/J	ENSMUSG00210046923	lncRNA gene	Chr5:106017444-106045763 (-)
DBA/2J	ENSMUSG00185044687	protein coding gene	Chr5:109044608-109053526 (-)
DBA/2J	ENSMUSG00185049158	lncRNA gene	Chr5:109044601-109073183 (-)
FVB/NJ	ENSMUSG00205049449	protein coding gene	Chr5:104915565-104943593 (-)
FVB/NJ	ENSMUSG00205052404	lncRNA gene	Chr5:104915558-104943536 (-)
JF1/MsJ	ENSUMUG00000055144	lncRNA gene	Chr5:111893243-111920536 (-)
LP/J	ENSMUSG00230049791	lncRNA gene	Chr5:113175116-113203217 (-)
LP/J	ENSMUSG00230048571	protein coding gene	Chr5:113175123-113203274 (-)
NOD/ShiLtJ	ENSMUSG00190051147	lncRNA gene	Chr5:104951648-104979631 (-)
NOD/ShiLtJ	ENSMUSG00190047516	protein coding gene	Chr5:104951652-104979688 (-)
NZO/HlLtJ	ENSMUSG00225025001	protein coding gene	Chr5:120797023-120805748 (-)
NZO/HlLtJ	ENSMUSG00225025978	lncRNA gene	Chr5:120797016-120825120 (-)
PWK/PhJ	ENSLUMG00010040435	lncRNA gene	Chr5:103799932-103827238 (-)
SPRET/EiJ	ENSMSPG00010046001	lncRNA gene	Chr5:107066785-107093395 (-)
WSB/EiJ	ENSIUOG00005044989	lncRNA gene	Chr5:107655321-107683214 (-)

Homology

• Gene Tree
  E130006D01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving E130006D01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  645
• Tissues
  13
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  78
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000085271 (Evidence)
• NCBI Gene
  269683

Representative Sequences			Length	Strain/Species
genomic	269683	NCBI Gene Model | MGI Sequence Detail	27445	C57BL/6J
transcript	NR_045832	RefSeq | MGI Sequence Detail	931	C57BL/6
polypeptide	Q8BN83	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  Genomic 2

  cDNA 4

  Primer pair 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3802085

References

• Summaries
  All 21

  Developmental Gene Expression 2

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314

TSS for E130006D01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52543	Chr5:111909563-111909593 (-)	16 bp