A430093F15Rik Gene Detail

Summary

• Symbol
  A430093F15Rik
• Name
  RIKEN cDNA A430093F15 gene
• Synonyms
  LOC269062

• Feature Type
  lncRNA gene
• IDs
  MGI:2685520
  NCBI Gene: 403202
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr19:10718311-10763407 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 7.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1502 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685520	lncRNA gene	Chr19:10718258-10768374 (+)
129S1/SvImJ	ENSMUSG00200053532	lncRNA gene	Chr19:7397211-7442453 (+)
A/J	ENSMUSG00195053313	lncRNA gene	Chr19:7612835-7657995 (+)
AKR/J	ENSMUSG00220050874	lncRNA gene	Chr19:7518074-7563353 (+)
BALB/cJ	ENSMUSG00180051778	lncRNA gene	Chr19:7971919-8017188 (+)
C3H/HeJ	ENSMUSG00175015465	lncRNA gene	Chr19:7244500-7289339 (+)
C57BL/6NJ	ENSMUSG00215048621	lncRNA gene	Chr19:7314548-7359783 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013515	unclassified non-coding RNA gene	Chr19:7976411-8020938 (+)
CAST/EiJ	ENSTCUG00005045342	lncRNA gene	Chr19:7111397-7157116 (+)
CBA/J	ENSMUSG00210050881	lncRNA gene	Chr19:7443088-7487934 (+)
DBA/2J	ENSMUSG00185053998	lncRNA gene	Chr19:7852811-7897659 (+)
FVB/NJ	ENSMUSG00205053207	lncRNA gene	Chr19:7334847-7379988 (+)
JF1/MsJ	ENSUMUG00000056822	lncRNA gene	Chr19:7973458-8005592 (+)
LP/J	ENSMUSG00230054268	lncRNA gene	Chr19:8771869-8817104 (+)
NOD/ShiLtJ	ENSMUSG00190052565	lncRNA gene	Chr19:7069777-7115025 (+)
NZO/HlLtJ	ENSMUSG00225047315	lncRNA gene	Chr19:12480704-12525956 (+)
PWK/PhJ	ENSLUMG00010008673	lncRNA gene	Chr19:7357940-7403656 (+)
SPRET/EiJ	ENSMSPG00010051050	lncRNA gene	Chr19:7204813-7251043 (+)
WSB/EiJ	ENSIUOG00005051164	lncRNA gene	Chr19:6962209-7006965 (+)

Homology

• Gene Tree
  A430093F15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000067577 (Evidence)
• NCBI Gene
  403202

Representative Sequences			Length	Strain/Species
genomic	403202	NCBI Gene Model | MGI Sequence Detail	45097	C57BL/6J
transcript	NR_027805	RefSeq | MGI Sequence Detail	2115	C57BL/6
polypeptide	Q8C505	UniProt | EBI | MGI Sequence Detail	100	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A430093F15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155101	Chr19:10716481-10716490 (+)	-1,825 bp
Tssr155102	Chr19:10718299-10718313 (+)	-5 bp
Tssr155103	Chr19:10719255-10719261 (+)	947 bp
Tssr155104	Chr19:10725347-10725363 (+)	7,044 bp
Tssr155105	Chr19:10737162-10737204 (+)	18,872 bp
Tssr155106	Chr19:10759210-10759244 (+)	40,916 bp
Tssr155107	Chr19:10760887-10760897 (+)	42,581 bp
Tssr155108	Chr19:10761587-10761596 (+)	43,281 bp
Tssr155109	Chr19:10761776-10761814 (+)	43,484 bp
Tssr155110	Chr19:10761945-10761963 (+)	43,643 bp